G208027 (uba2)


Basic Information

Item Value
gene id G208027
gene name uba2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26123347 ~ 26124768 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282361
CAAGTTGCAGCATTTCAGCCCAGTCCAGGGGTACTGGGGCTTTCCTCTTCTTCCACAGTTTATCCATAGTCAACAAATACATGATGTCATCTTTGAAGAGCTTGTTGAAGAGTTTGACAGGGTCATAGCCTGTGGAGCGAGCCCAGTCTTTGGTAGAAACACGTTTGATATCTCCATCCTGATCAGAGGCTGTAGCTCGTGCGGCTGTGTCTTCAGGATTccATGCAGCCTCAGGGTCAGCCGTGTCTGGGGACACCTCCTGATCTGCATCCTCTTCTCCAAAAA

Function

symbol description
uba2 Predicted to enable SUMO activating enzyme activity. Predicted to be involved in protein sumoylation. Predicted to be located in nucleus. Predicted to be part of SUMO activating enzyme complex. Predicted to be active in cytoplasm. Orthologous to human UBA2 (ubiquitin like modifier activating enzyme 2).

NR:

description
PREDICTED: SUMO-activating enzyme subunit 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282361 True 285 lncRNA 0.50 3 26123347 26124768

Neighbor

gene id symbol gene type direction distance location
LOC111195834 NA coding downstream 23520 26096805 ~ 26099827 (-)
LOC111195867 NA coding downstream 28156 26092170 ~ 26095191 (-)
LOC103040521 NA coding downstream 437736 25681230 ~ 25685611 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding downstream 551076 25496301 ~ 25572271 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding downstream 671256 25412186 ~ 25452091 (-)
LOC111195836 NA coding upstream 119480 26244248 ~ 26246421 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding upstream 489094 26613862 ~ 26640223 (-)
cep290 cep290 coding upstream 548838 26673606 ~ 26715253 (-)
kitlg NA coding upstream 667994 26792762 ~ 26815459 (-)
LOC111195856 NA coding upstream 821526 26946294 ~ 26949370 (-)
G208026 uba2,LOC107701803 non-coding downstream 980 26121477 ~ 26122367 (-)
G208022 NA non-coding downstream 23524 26091811 ~ 26099823 (-)
G208015 sept15,LOC108428130,LOC107707522,LOC107701486,LOC107654154 non-coding downstream 46701 26061311 ~ 26076646 (-)
G208011 NA non-coding downstream 108344 26014747 ~ 26015003 (-)
G208008 NA non-coding downstream 109731 26007220 ~ 26013616 (-)
G208030 NA non-coding upstream 2339 26127107 ~ 26157046 (-)
G208029 ca5a,LOC107583128,LOC108268921,LOC107701525,LOC107654151,LOC107581837 non-coding upstream 9818 26134586 ~ 26155268 (-)
G208042 NA non-coding upstream 39147 26163915 ~ 26169806 (-)
G208047 NA non-coding upstream 90131 26214899 ~ 26215110 (-)
G208048 NA non-coding upstream 90685 26215453 ~ 26215729 (-)
LOC111195835 NA other downstream 5715 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 34932 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 36843 26079764 ~ 26086504 (-)
LOC111195825 NA other downstream 130853 25989438 ~ 25992494 (-)
LOC111195756 NA other downstream 185315 25919220 ~ 25938032 (-)
G208046 NA other upstream 87290 26212058 ~ 26212841 (-)
G208394 borcs5,LOC107753635 other upstream 530675 26655443 ~ 26656184 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 2091627 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 2537415 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 2658315 28783083 ~ 28860774 (-)

Expression


Co-expression Network