G208030


Basic Information

Item Value
gene id G208030
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26127107 ~ 26157046 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282369
agctttacaactgatgctctcaaacacattaagaggacaaaaattcgCACCCTTCAATTCCACCAACTCAAACAACTCTTGGTCTAAAAAGCTTAAATGCTTGAAAACACAGGAGACAGAATCATTGGAGAagttgtttgtattttattccATTTCATTCTTTACATCAAAGAAACTTCACAATGTTGTGGACAGCATGAATGAGCAGTTGTAATGTAGATGTCTGGCCTGTGTTTTCATAGATGCTCTCTCCCACTGACACAACCAGGAGAGCGAGCACCTGATAGGCCTTAGTACAGCTGGACCGGCCTGGACCAGACCAGAGCAGACCAGCACCTGCTACAACACTGCATGCTGAGAACGGACCTCCGGAAAGATCCAGAAACCTCCGGAAACGCCCACTTATCCAGTTCGGGTCCACAGGGAACCGGGCAGTGAACGCCcgacagcaaaaacaaacaattcaTACATTCACTATATTACACACTatattacacaaacacaaactttcataccaaaaaaaaaaaaatcaaacatttttcTGAAAAGATTGTGCGTGATTAGTCTTATAATCACAGGCAGTACTGGCAGACAGAGTGTTTTGCATATGAAAATGACCTATGGTAATGATATTGAATTATAGAAAAAAAGGGCAGAgtgtgatttattcatttacattcaatCTAAAGAAGAGAAATGagtgagaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282369 True 729 lncRNA 0.39 4 26127107 26157046

Neighbor

gene id symbol gene type direction distance location
LOC111195834 NA coding downstream 27280 26096805 ~ 26099827 (-)
LOC111195867 NA coding downstream 31916 26092170 ~ 26095191 (-)
LOC103040521 NA coding downstream 441496 25681230 ~ 25685611 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding downstream 554836 25496301 ~ 25572271 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding downstream 675016 25412186 ~ 25452091 (-)
LOC111195836 NA coding upstream 87202 26244248 ~ 26246421 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding upstream 456816 26613862 ~ 26640223 (-)
cep290 cep290 coding upstream 516560 26673606 ~ 26715253 (-)
kitlg NA coding upstream 635716 26792762 ~ 26815459 (-)
LOC111195856 NA coding upstream 789248 26946294 ~ 26949370 (-)
G208027 uba2 non-coding downstream 2339 26123347 ~ 26124768 (-)
G208026 uba2,LOC107701803 non-coding downstream 4740 26121477 ~ 26122367 (-)
G208022 NA non-coding downstream 27284 26091811 ~ 26099823 (-)
G208015 sept15,LOC108428130,LOC107707522,LOC107701486,LOC107654154 non-coding downstream 50461 26061311 ~ 26076646 (-)
G208011 NA non-coding downstream 112104 26014747 ~ 26015003 (-)
G208042 NA non-coding upstream 6869 26163915 ~ 26169806 (-)
G208047 NA non-coding upstream 57853 26214899 ~ 26215110 (-)
G208048 NA non-coding upstream 58407 26215453 ~ 26215729 (-)
G208070 NA non-coding upstream 123401 26280447 ~ 26281036 (-)
G208307 NA non-coding upstream 205040 26362086 ~ 26362363 (-)
LOC111195835 NA other downstream 9475 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 38692 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 40603 26079764 ~ 26086504 (-)
LOC111195825 NA other downstream 134613 25989438 ~ 25992494 (-)
LOC111195756 NA other downstream 189075 25919220 ~ 25938032 (-)
G208046 NA other upstream 55012 26212058 ~ 26212841 (-)
G208394 borcs5,LOC107753635 other upstream 498397 26655443 ~ 26656184 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 2059349 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 2505137 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 2626037 28783083 ~ 28860774 (-)

Expression


Co-expression Network