CI01000009_13975122_13976026


Basic Information

Item Value
gene id CI01000009_13975122_13976026
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 13975099 ~ 13978614 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_13975122_13976026.mRNA
ATAATCATGAAGCAACAATACAATAATTCCCAATATGCAAAAAATATATATAATAGTTTTTGTGAGAACTTGCCAACTCAGTTAGCTTACAAGTCAACTCCGTCAAACATAAAAACTGATGGAGTTGACGTCTTACGGAGTTGACAAAATTGAATATTTTTCCCATCTTAACCATGTGTTGTAACAGTGGAGCCATTTCGTTTTTTCCTCAGTTTTAGCTTTCTTATACACATAACAAAAATGCCAAGAGTTATTCCACAACTACTGTATTTACAGAAACTATTAGACTGGGAAGACGGAGTTGACATGTTAAAGCTGTGACGGCAGATAATTCAACATTATTTGTTTAAAATATAAAAAATATATATATAAAACTTCTAGGGCTATGTGTCCTACTGTGGCATCCAAAATGAGCTGGAAATAGGAAAGGGTCCTCACAGTTAAAGTTGACTATGGCATTGCCTGATTTATTCAGAATTACAAAATCTTGATGGAGTTGATGCAAAGTGAGGACACAACTTTGATAGGCATTTTTTATGGAAAATATAATTAAAAATTTACCTTTTGTATTGCTTAATATCTTAAGATCTTAAGATCTGTGCCTTTCAATTTAACTGTATAGTTTTTTTTTTTGCATTTTTAAACATTTTGTTAGGCAGTTTTACATTGTGACCTCATGCTGAGGACAGGTTAAATTACATGTGTTTTCCAGTATTCAAAATAATACTAAAAACTTTTTAAAAAAAAATATAAGCAATGAATGCCCTGAGTATACAGGTTTCCATCAGATGTAACTTTTTGAACATTTTTATGAATTTCTTCATTTTTAACATAAAGAGGGCTTTTGTGTGTAGACACGTTTTGTCCCTTATCTCAAGAATCAGTGGACTACAAAGGTCAGGTTTAACAGGTGTTACAGGTGTTTAAGTACTGGTACATAAACAAAACTCCTTTAGAGCATAGTGCACTTCACTCCTATCACCTGTACTCTCTGTTATTTGCTACTTATTGCTGAGGAAGAGTTGATTTTAGTTCTTACGACTACATTTATACATTTTCTGCTTTTCTCTCTCTAAACAGCACAACTAAGTAGTAAGAATGAGTACTTGTACAGGACCAGAAAATGCCAAAGTTGTAGTGATAGGTTCAGGTTTTGCAGGTTTGGCTGCTGCAGCCAGGTTGGTGAAGGGAGGATTTAAAAATGTTTTGGTACTTGAGGCAAAGGAGAGGGTTGGAGGTCGAGTTCACACCACTAAACCATTCACCGAGAATATCATTGAAATTGGAGCTAACTGGATTCACGGGCAGAAAGAAAACCCCCTGTTCAAGATTGCAAAAGAGAAGAACCTGCTATCCGAGGGACTGTCTGCACGCAAAAACATGTGCTTACCCCGTTCTGTAACTCCTCAAGATTACTTTTTCAAAGAAGATGGCAAGCAGGTCTCCACAAAAGTTGTAGATCAGGTGTGTTCGCACTTCAACAAGCTCACCGACAAAGCTTTTGATGATGAACTTGAGTGCAAGCACAGAAAACTAACTCTAGGTGCTTATCTGGACGATGCCTTTGGTGAATCTCCTTTAGCTTCAACAGAAGACGGCCAGCAAGTTTTTGAATGGCACACCGGTGATTCGGCGAGTAAGATCATGAATTAGGGGAGAACTGGTGGAGTAATAAA
>TU67750
ACTGGTCGTCAAGGAAGCTGTATGAATTGAAAACAAAAATGTGTTCGTTTATTTAGTTTTACAGGGCAGCAATTACATTTTGTAAGTATCATACAGCCTCAAAAATGCAAACGAGATGAGAGGATAGTATTTGAATCTTCATCTGCCATTGGATGTCCCATGGCCGACTATCTATGTAAACAAATATACATTGTATAGACTACAGACAAAGGTCAGGTTTTACAGGAGTTTATAAGCACTATATAAAGGAAACTACTTTAGAGCATCGTGCACTACGCTTGTATCACCTGTACTCTCTGTTATTTGCTACTTATTGCTGAGCAAGTGTTGCTTTTTTGTACATTTAAAGATTTTCTGCCTTTCTCTCTATAAACAGCTCAACAAAGCAGCAAGAATGTACTTGTTCGGGACCAGAAAGGTAAGCATTACTATGTGCCACCCTGTAGCAGCAACAGCAATGTTCTCAATTCTGTGTGAATCCAAAGGATCTGTATCCTGTCTTTAAACCGAAACTATTATGTAAATTTAATTTGTGACTGTCCTGCAAGACTTAAGCTTTGGGCAGCTGGCGTTGGACATGTTTGCTCTCTATTAAGTCCATTACATTAGGGTTTGCTATTGCTATGATCTCATGTGAGTGACAGGTGGTAAAAATAATAATAATAATAATGTGCATGGATAGATCATGTATAATAAACCTTTAAAAGAGCTGTTTTTTTAGGTTAGGGTTAGGAAATTAGTTGTGATTGTTAGGATAAGGGGCTAGGGATTGCATTAGTATATTAATTAGGGGTGTAACAATATATCGTGTCACAATATATCGCAATAAAGAAATGCAACAATATGATTTGTGGATAGTGACAATATGTATTGTGTATAGTTCACCCGAAATGAAAATTACTGTGTGAGAAAAAATTGAAGTTTACAAATTTTTAGTGTCAGTTCTACATTGAACTACTATTTATAATGTTGAATATAATGTATAACAATGCATTGGGGGAATATTTGTGGGTCCTGATAATGCCAAATGTCTTGTGTTACCAGTAAAAAGTGGCCTACATTATTTTAAATATATCTAGTCAATGACAGTGCAAGCATGTTCATATTTTTCTGCATTTTCAGCTTCAGAATCATGAATATTTTTATTCTGGTATCAACATTGTCCTGTGCATTGGGTTACCAGCACCAAGTCCAAGCCTATTCATTTCCACCCCCAATGTAATAACAAATTTAGCATTTTAATCAACAGTTAATTTTTTGTTAACCTTTTACCATATGCCTTGAAGTATCGCAATAATATCATATCATGAGTTCAGTATTGTGATATGTATGAAAGTGTGACATGAGGGTATCGTTACATCCCTAATATCAATATATGTCCTCACAAAGATAGCTATACAAACAGGTGTGTGTGTCTGTGTGCATGTCAGCAGTAGATTTAAAGATTTTATGTATAAAAGGCATGTAAATCAGGCCAAATATATGTAAATATAATCATGAAGCAACAATACAATAATTCCCAATATGCAAAAAATATATATAATAGTTTTTGTGAGAACTTGCCAACTCAGTTAGCTTACAAGTCAACTCCGTCAAACATAAAAACTGATGGAGTTGACGTCTTACGGAGTTGACAAAATTGAATATTTTTCCCATCTTAACCATGTGTTGTAACAGTGGAGCCATTTCGTTTTTTCCTCAGTTTTAGCTTTCTTATACACATAACAAAAATGCCAAGAGTTATTCCACAACTACTGTATTTACAGAAACTATTAGACTGGGAAGACGGAGTTGACATGTTAAAGCTGTGACGGCAGATAATTCAACATTATTTGTTTAAAATATAAAAAATATATATATAAAACTTCTAGGGCTATGTGTCCTACTGTGGCATCCAAAATGAGCTGGAAATAGGAAAGGGTCCTCACAGTTAAAGTTGACTATGGCATTGCCTGATTTATTCAGAATTACAAAATCTTGATGGAGTTGATGCAAAGTGAGGACACAACTTTGATAGGCATTTTTTATGGAAAATATAATTAAAAATTTACCTTTTGTATTGCTTAATATCTTAAGATCTTAAGATCTGTGCCTTTCAATTTAACTGTATAGTTTTTTTTTTTGCATTTTTAAACATTTTGTTAGGCAGTTTTACATTGTGACCTCATGCTGAGGACAGGTTAAATTACATGTGTTTTCCAGTATTCAAAATAATACTAAAAACTTTTTAAAAAAAAATATAAGCAATGAATGCCCTGAGTATACAGGTTTCCATCAGATGTAACTTTTTGAACATTTTTATGAATTTCTTCATTTTTAACATAAAGAGGGCTTTTGTGTGTAGACACGTTTTGTCCCTTATCTCAAGAATCAGTGGACTACAAAGGTCAGGTTTAACAGGTGTTACAGGTGTTTAAGTACTGGTACATAAACAAAACTCCTTTAGAGCATAGTGCACTTCACTCCTATCACCTGTACTCTCTGTTATTTGCTACTTATTGCTGAGGAAGAGTTGATTTTAGTTCTTACGACTACATTTATACATTTTCTGCTTTTCTCTCTCTAAACAGCACAACTAAGTAGTAAGAATGAGTACTTGTACAGGACCAGAAAATGCCAAAGTTGTAGTGATAGGTTCAGGTTTTGCAGGTTTGGCTGCTGCAGCCAGGTTGGTGAAGGGAGGATTTAAAAATGTTTTGGTACTTGAGGCAAAGGAGAGGGTTGGAGGTCGAGTTCACACCACTAAACCATTCACCGAGAATATCATTGAAATTGGAGCTAACTGGATTCACGGGCAGAAAGAAAACCCCCTGTTCAAGATTGCAAAAGAGAAGAACCTGCTATCCGAGGGACTGTCTGCACGCAAAAACATGTGCTTACCCCGTTCTGTAACTCCTCAAGATTACTTTTTCAAAGAAGATGGCAAGCAGGTCTCCACAAAAGTTGTAGATCAGGTGTGTTCGCACTTCAACAAGCTCACCGACAAAGCTTTTGATGATGAACTTGAGTGCAAGCACAGAAAACTAACTCTAGGTGCTTATCTGGACGATGCCTTTGGTGAATCTCCTTTAGCTTCAACAGAAGACGGCCAGCAAGTTTTTGAATGGTGCAAGAGGATCGAATGCACAGATGAGGCTTGCTCTAGCCTCTATGAGGTTTCTGCATCTCAGATTAGCTATTACACCGCTCTAGAGGGAGGATTTTTTAATACTTTGGGAACTGGTGGA

Function

NR:

description
Spermine oxidase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_13975122_13976026.mRNA False 1676 mRNA 0.37 2 13975099 13977124
TU67750 True 3227 TUCP 0.36 1 13975388 13978614

Neighbor

gene id symbol gene type direction distance location
CI01000009_13963789_13974296 DNAJC10 coding downstream 803 13962949 ~ 13974296 (-)
CI01000009_13946619_13952884 NA coding downstream 21378 13946499 ~ 13953721 (-)
CI01000009_13878935_13880850 DUSP19A, DUSP19 coding downstream 94249 13876342 ~ 13880850 (-)
CI01000009_13761020_13794137 PDE1A coding downstream 180911 13760110 ~ 13794188 (-)
CI01000009_13667246_13668040 NDF1, NEUROD1 coding downstream 306502 13666453 ~ 13668597 (-)
CI01000009_13983271_13988001 NA coding upstream 6084 13983208 ~ 13988348 (-)
CI01000009_13990326_14004387 VIL1 coding upstream 12608 13989732 ~ 14004826 (-)
CI01000009_14012800_14024940 ITGB2 coding upstream 34826 14011950 ~ 14025231 (-)
CI01000009_14052206_14053489 NA coding upstream 74845 14051969 ~ 14053953 (-)
CI01000009_14201347_14205288 NA coding upstream 223991 14201115 ~ 14205887 (-)
G59488 NA non-coding downstream 34471 13939445 ~ 13940628 (-)
G59489 NA non-coding downstream 43418 13883972 ~ 13931681 (-)
G59470 NA non-coding downstream 110496 13826486 ~ 13864603 (-)
G59472 NA non-coding downstream 155103 13799998 ~ 13819996 (-)
G59473 NA non-coding downstream 187686 13700592 ~ 13787413 (-)
G59491 NA non-coding upstream 62200 14039324 ~ 14039893 (-)
G59552 NA non-coding upstream 98500 14075624 ~ 14075833 (-)
G59602 NA non-coding upstream 187768 14164892 ~ 14214853 (-)
G59610 NA non-coding upstream 198879 14176003 ~ 14176444 (-)
G59626 NA non-coding upstream 211261 14188385 ~ 14189163 (-)
G59097 NA other downstream 1685581 12288217 ~ 12289518 (-)
CI01000009_08858198_08860555 NA other downstream 5114536 8856310 ~ 8860563 (-)
G55814 NA other downstream 5547087 8425821 ~ 8428012 (-)
G53515 NA other downstream 8469851 5502395 ~ 5505248 (-)
G52828 NA other downstream 9743630 4217420 ~ 4231469 (-)
G59490 NA other upstream 56440 14033564 ~ 14037873 (-)
G59811 NA other upstream 885273 14862397 ~ 14887464 (-)
G59941 NA other upstream 1154980 15132104 ~ 15132503 (-)
CI01000009_15318811_15390382 TNS1 other upstream 1399136 15318811 ~ 15390382 (-)
CI01000009_15654061_15662554 ARPC2 other upstream 1669651 15653760 ~ 15663026 (-)

Expression


Co-expression Network