G208344


Basic Information

Item Value
gene id G208344
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26471223 ~ 26471582 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282738
TAGCCGCAAAATaatgacagaaaacactgaggaagCAGCAGAATTGAATTATAATATGAGCGCGAGGGAGATAAAAGCACGTGTTCTGTAGTGAAACAGAAGATACAGTATGAGGAATAAACTCCACACAGCTACAAGTCCTTCTGAGAAGCAGCTGTGAGAaactttacctgtgagtagctcaaaCACCACAACACCCCACGTGGGAGGATGAactgataaatctctctctctctcgcactcactTATAGTTGATCATTTTGATTaaaattagtgaaacctgtaaagtttgagtgtttgagtttatgtgtttctcagattgatctctctaatataatgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282738 True 340 lncRNA 0.39 2 26471223 26471582

Neighbor

gene id symbol gene type direction distance location
LOC111195836 NA coding downstream 224802 26244248 ~ 26246421 (-)
LOC111195834 NA coding downstream 371396 26096805 ~ 26099827 (-)
LOC111195867 NA coding downstream 376032 26092170 ~ 26095191 (-)
LOC103040521 NA coding downstream 785612 25681230 ~ 25685611 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding downstream 898952 25496301 ~ 25572271 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding upstream 142280 26613862 ~ 26640223 (-)
cep290 cep290 coding upstream 202024 26673606 ~ 26715253 (-)
kitlg NA coding upstream 321180 26792762 ~ 26815459 (-)
LOC111195856 NA coding upstream 474712 26946294 ~ 26949370 (-)
LOC111195857 NA coding upstream 480107 26951689 ~ 26953473 (-)
G208329 NA non-coding downstream 52775 26417721 ~ 26418448 (-)
G208307 NA non-coding downstream 108860 26362086 ~ 26362363 (-)
G208070 NA non-coding downstream 190187 26280447 ~ 26281036 (-)
G208048 NA non-coding downstream 255494 26215453 ~ 26215729 (-)
G208047 NA non-coding downstream 256113 26214899 ~ 26215110 (-)
G208356 pigy non-coding upstream 37668 26509250 ~ 26514290 (-)
G208357 LOC108439330,LOC107665709,LOC105895626,LOC107753524 non-coding upstream 114640 26586222 ~ 26588390 (-)
G208386 NA non-coding upstream 160571 26632153 ~ 26635540 (-)
G208390 NA non-coding upstream 174090 26645672 ~ 26645939 (-)
G208392 NA non-coding upstream 176895 26648477 ~ 26648687 (-)
G208046 NA other downstream 258382 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 353591 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 382808 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 384719 26079764 ~ 26086504 (-)
LOC111195825 NA other downstream 478729 25989438 ~ 25992494 (-)
G208394 borcs5,LOC107753635 other upstream 183861 26655443 ~ 26656184 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 1744813 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 2190601 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 2311501 28783083 ~ 28860774 (-)
G209090 NA other upstream 3552379 30023961 ~ 30024550 (-)

Expression


Co-expression Network