G208357 (LOC108439330,LOC107665709,LOC105895626,LOC107753524)


Basic Information

Item Value
gene id G208357
gene name LOC108439330,LOC107665709,LOC105895626,LOC107753524
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26586222 ~ 26588390 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282754
CGCAGTAGTGCAATAGTGTAACTGTAGAGGGAGCCCGGGAGCATGACTATACTAATTCTCACATACATCTGCTTTAAAATGAAGCTAGTGTTTTGTTCACGATTGTATGTAATGAACAAAAAgaatacaatttaaatacctttattaaaataaacatttttaaagctataaaacaacaaacactACTCTGGACAAAGTCATCTTTGGAGCAGTGGTACCCCACTGCagctacaaataaaaacaaagaaatagaaACATAACATGTAAAGGTTGTGACATCACTTGTGTACTTTACTCATAGGCCATGCATCACAGTGAGACTCCACAGGTGCTCTATGAGAGTGGCTCAGTCTTCCAACAACAGTGACACAGCAAAAcaaacgtaaaaataaaatcaagcgCTTCTATCCTAAGACAGTGCTGGATCGCACACACATTTCATCTGGTTGAGCACTAATTGTCACAACGCTAAGACAGCAGTTACTGATGGTAATCTTGGGCTTAGCCCCAGACCTTTGTGTTTTGACTGGAAGACTGAGAATCACTGCATTAACTCAACAGCCCACTTTGTAGGGAATAAGAAATGTACAGACTATTGCTATATCAGACTACAAAAGATTGCACAATACTATATACTTTTAAGACAACTTGACATTCTGgtgctttcttttttctgtttatgtacCATATAggcttgcattttttttttcttttttacaaaaacatcaATCTAGCTTTAGTAGTTCTCTGTGTTAAACATCAGTCATGATCAGGATAACCATCATTAATTAAAGTGGAGTTTctctttaaaaaacatcaaGTGACTGACTGATTACCACAAGGTGGATAGGGGTTTTCGTTCTATTACAACCAaaatgtctttctctctttaaaaacactgcaaaacattATATGTGCTCACTGCTGGGGCAGAAGGCTGGTCTCTGAGGCTCATAAGGCAGAAAGAGACGGTCACAAAAGGCAACGTGGTTTTTGCTGCCTAGCCCCTCACTGCAGTGATTTGCGTGTGCAGGGGTGGAACTGGATGGTGGGAGTGCGTCAGACGGCTGGGGACGGTGCATCTGGATCAGGCTCATAGTGGTGGCTGGGCTGAGGCTGGTGGCTGGGGAGGATGTCTAGTTCGTCCACCTGAGGCCCGGGATGCATGACGACCAACTGATCCTGAGGGATGTCTGCAGCGGCGGCCGCCAGGTTGGTGATGGATTTGCTCTTGACGCACTGAAAGTCCACATGGCGACTCTTGCCCTCCTCCTTTTCCCAGGACATGCGAATGAATGGCCTCTGCACATAGTTGTAGATTACCTCGGGCCGGCCACCGGGACGTTTCTTAACTTTCTCTTTGTAGGTTGGATAGCCTTCAATGCCTAATCTGATTTTCTTCAGTCCTCTCTCCTTCAAGACTGACTTGGCAACATCTCGATTCTCAATGTACTTAAAGAACCGATACAGTTTTGTGCTGTAGATAaTCTGGGAGTACTCCTCGCCCATTTGTGGTGGGTATTCTTCGTCCCAGTCCACAACATCATCATCAGTCAGCACAACTACATGGCACTCCCTCTCTCCACTCTGGGCGC

Function

NR:

description
PREDICTED: BTB/POZ domain-containing protein 10-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282754 True 1595 lncRNA 0.44 3 26586222 26588390

Neighbor

gene id symbol gene type direction distance location
LOC111195836 NA coding downstream 339801 26244248 ~ 26246421 (-)
LOC111195834 NA coding downstream 486395 26096805 ~ 26099827 (-)
LOC111195867 NA coding downstream 491031 26092170 ~ 26095191 (-)
LOC103040521 NA coding downstream 900611 25681230 ~ 25685611 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding downstream 1013951 25496301 ~ 25572271 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding upstream 25472 26613862 ~ 26640223 (-)
cep290 cep290 coding upstream 85216 26673606 ~ 26715253 (-)
kitlg NA coding upstream 204372 26792762 ~ 26815459 (-)
LOC111195856 NA coding upstream 357904 26946294 ~ 26949370 (-)
LOC111195857 NA coding upstream 363299 26951689 ~ 26953473 (-)
G208356 pigy non-coding downstream 71932 26509250 ~ 26514290 (-)
G208344 NA non-coding downstream 114640 26471223 ~ 26471582 (-)
G208329 NA non-coding downstream 167774 26417721 ~ 26418448 (-)
G208307 NA non-coding downstream 223859 26362086 ~ 26362363 (-)
G208070 NA non-coding downstream 305186 26280447 ~ 26281036 (-)
G208386 NA non-coding upstream 43763 26632153 ~ 26635540 (-)
G208390 NA non-coding upstream 57282 26645672 ~ 26645939 (-)
G208392 NA non-coding upstream 60087 26648477 ~ 26648687 (-)
G208395 NA non-coding upstream 68099 26656489 ~ 26657416 (-)
G208417 NA non-coding upstream 201250 26789640 ~ 27220851 (-)
G208046 NA other downstream 373381 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 468590 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 497807 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 499718 26079764 ~ 26086504 (-)
LOC111195825 NA other downstream 593728 25989438 ~ 25992494 (-)
G208394 borcs5,LOC107753635 other upstream 67053 26655443 ~ 26656184 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 1628005 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 2073793 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 2194693 28783083 ~ 28860774 (-)
G209090 NA other upstream 3435571 30023961 ~ 30024550 (-)

Expression


Co-expression Network