G208394 (borcs5,LOC107753635)


Basic Information

Item Value
gene id G208394
gene name borcs5,LOC107753635
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26655443 ~ 26656184 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282801
GGTAACTGTGTAGTACCtacaatatacattttgtttatttgtcatAAGAAGAGGTATCACAACCTTTTGAGAAGCAAAGAGCTTTGTGTGCAGTGCAAAAATATCCACATGTAAACTTAACAAAACCAGAATAAATGTCTAACAGTGTTCTCTGGCCCAGGGGATATCTGCCTGCATGTTCTGGACCAGGCACCCGGTGTGTTCTATTTGAGTTCTCCATCTGGCTTCATGCTAAAAGGCTCCAGACGTTCACCCTCAGGCAGCAGATTGTTGAGTCGCTCCATCAGAGGAACGGTCTGGTCAATGCCCATCTGGATTCGCCGCAGAATCATGGACATCTCGTTCACCTTCTGGATCTGCTCTGCATACTTGGCGTATCGCTTCTGTCTCTCCTGCATGATGCTGAAAAGTGTCTCCACAGACAGGTCCATCTGGAAGAAGAACAGTCAGCCTGAGCCTTATAGGAAAGTCTGTCCACACAACAGCTACGCTACCAATACTACTGATGCCCTCATGGCAGTTTCTACCAG

Function

symbol description
borcs5 Predicted to be involved in lysosome localization; organelle transport along microtubule; and positive regulation of anterograde synaptic vesicle transport. Predicted to be located in lysosomal membrane. Predicted to be part of BORC complex. Predicted to be active in cytoplasmic side of lysosomal membrane and synaptic vesicle membrane. Predicted to be intrinsic component of membrane. Orthologous to human BORCS5 (BLOC-1 related complex subunit 5).

NR:

description
BLOC-1-related complex subunit 5 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282801 True 530 TUCP 0.46 2 26655443 26656184

Neighbor

gene id symbol gene type direction distance location
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding downstream 15220 26613862 ~ 26640223 (-)
LOC111195836 NA coding downstream 409022 26244248 ~ 26246421 (-)
LOC111195834 NA coding downstream 555616 26096805 ~ 26099827 (-)
LOC111195867 NA coding downstream 560252 26092170 ~ 26095191 (-)
LOC103040521 NA coding downstream 969832 25681230 ~ 25685611 (-)
cep290 cep290 coding upstream 17422 26673606 ~ 26715253 (-)
kitlg NA coding upstream 136578 26792762 ~ 26815459 (-)
LOC111195856 NA coding upstream 290110 26946294 ~ 26949370 (-)
LOC111195857 NA coding upstream 295505 26951689 ~ 26953473 (-)
LOC103031696 ano1,LOC105911290,LOC106573096 coding upstream 370310 27026494 ~ 27233590 (-)
G208392 NA non-coding downstream 6756 26648477 ~ 26648687 (-)
G208390 NA non-coding downstream 9504 26645672 ~ 26645939 (-)
G208386 NA non-coding downstream 19903 26632153 ~ 26635540 (-)
G208357 LOC108439330,LOC107665709,LOC105895626,LOC107753524 non-coding downstream 67053 26586222 ~ 26588390 (-)
G208356 pigy non-coding downstream 141153 26509250 ~ 26514290 (-)
G208395 NA non-coding upstream 305 26656489 ~ 26657416 (-)
G208417 NA non-coding upstream 133456 26789640 ~ 27220851 (-)
G208438 NA non-coding upstream 184105 26840289 ~ 26871460 (-)
G208445 NA non-coding upstream 203227 26859411 ~ 26863216 (-)
G208446 NA non-coding upstream 205457 26861641 ~ 26881461 (-)
G208046 NA other downstream 442602 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 537811 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 567028 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 568939 26079764 ~ 26086504 (-)
LOC111195825 NA other downstream 662949 25989438 ~ 25992494 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 1560211 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 2005999 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 2126899 28783083 ~ 28860774 (-)
G209090 NA other upstream 3367777 30023961 ~ 30024550 (-)
G209127 NA other upstream 3506273 30162457 ~ 30162973 (-)

Expression


Co-expression Network