G208445


Basic Information

Item Value
gene id G208445
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 26859411 ~ 26863216 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282869
TTGCCCTCATGggtataatgataataacactGGCCATTGTCTCAAAGCAAGAACAACTAACAACGGTAGAGGGAACAATTATGAACACTTCGGCGACCATGCACCCGACAAATGCAACAGCTAAAGACCAGCCCACACAACTTAATAGAACCAAATGATCAACCATCGCCCAGTCCAACTCAAAATGCATTAGGCGCTGGGGAGGTATAGAACTAGACTATTATTGGGGCGGAAACGACCGCATGGACAGTGAACTTATGCGACGTAGTGACTTGTGGTAAGCTGGGGTCCAAGGGGGAAGCGGTGTACTTGTGTTGGTCTCGTGATGATAATCTTAAGTGTAACCATAACACCGACCAAGCAGCTTATAAGGCCAGACCTTGTAACAAGTGGGAACACGTAATTAGGTCAACGCATGTCAATTGGGATCCGAGCGAACGTTGGCACAAACTTAACATACAAAGAGATAACGATCCGATAAACAATCTAATAACCATTGCATTAGAGTGGCAATCCGATCCTAATGGGGAAAAATCTTCGGCATTTTTCATAGGGGTCGGGGTGGATGTAAGTGGTAATGACCCTGTGGGATGGATCAAAGTTAGAGCTACAGATAAACCGACCTATActggagtgtgaggaagagctGGAGGAAATGCTGTAAACCAACCAGTCTTGGGGATGACTTTAAGGtaatgatgtcacttcctcctTGATCTTTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282869 True 724 lncRNA 0.45 3 26859411 26863216

Neighbor

gene id symbol gene type direction distance location
kitlg NA coding downstream 43952 26792762 ~ 26815459 (-)
cep290 cep290 coding downstream 144158 26673606 ~ 26715253 (-)
LOC103031232 arntl1a,LOC108439331,LOC107707455,LOC107753525,LOC107665721,LOC108269000 coding downstream 219188 26613862 ~ 26640223 (-)
LOC111195836 NA coding downstream 612990 26244248 ~ 26246421 (-)
LOC111195834 NA coding downstream 759584 26096805 ~ 26099827 (-)
LOC111195856 NA coding upstream 83078 26946294 ~ 26949370 (-)
LOC111195857 NA coding upstream 88473 26951689 ~ 26953473 (-)
LOC103031696 ano1,LOC105911290,LOC106573096 coding upstream 163278 27026494 ~ 27233590 (-)
LOC111195765 NA coding upstream 245083 27108299 ~ 27111038 (-)
LOC111195771 NA coding upstream 282820 27146036 ~ 27152300 (-)
G208395 NA non-coding downstream 201995 26656489 ~ 26657416 (-)
G208392 NA non-coding downstream 210724 26648477 ~ 26648687 (-)
G208390 NA non-coding downstream 213472 26645672 ~ 26645939 (-)
G208386 NA non-coding downstream 223871 26632153 ~ 26635540 (-)
G208357 LOC108439330,LOC107665709,LOC105895626,LOC107753524 non-coding downstream 271021 26586222 ~ 26588390 (-)
G208447 NA non-coding upstream 170 26863386 ~ 26868253 (-)
LOC111195767 NA non-coding upstream 5937 26869153 ~ 26870117 (-)
G208448 NA non-coding upstream 20288 26883504 ~ 26892257 (-)
G208455 NA non-coding upstream 22260 26885476 ~ 26894050 (-)
G208429 NA non-coding upstream 26308 26889524 ~ 26891164 (-)
G208394 borcs5,LOC107753635 other downstream 203227 26655443 ~ 26656184 (-)
G208046 NA other downstream 646570 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 741779 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 770996 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 772907 26079764 ~ 26086504 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 1353179 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 1798967 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 1919867 28783083 ~ 28860774 (-)
G209090 NA other upstream 3160745 30023961 ~ 30024550 (-)
G209127 NA other upstream 3299241 30162457 ~ 30162973 (-)

Expression


Co-expression Network