G208518


Basic Information

Item Value
gene id G208518
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 27165176 ~ 27181579 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU282971
GTTTTCCCATTgaaatgaatggggggcccagagttccatctcgcacacgagcagctctgcgcacggaaccccttctctcccctgctcctccagtactgtgagtgtatggaggagctgctgtatggagcagctatcagtcaaaagtttggacaccccggcaccccagccagggcttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttaacaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagtaaccacctggaaaatgttagcaactgcctaacaaccacttagcacccactttagaaatgatagcaactgcctagcaaccacttagcaacaccttaacaaccactaggaaaacattagcaactgcctagcaaccacttagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttaacaaccactaggaaaatgttagcaactgcctagcaaccacttagcaaacactttagaaatgatagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacattagcaactgcctagcaaccacttagcaaccactttagaaattatagcaactgcctagcaaccacttagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaattatagcaactgcctagcaaccagttagcaacaccttagcaaccatgtggaatataagagcaactgcctagcaacagcttagcaaccacctggtatatgttagcaaccagttagcaacagctTAACGTTTCtag
>TU282973
tattattaagttggcttggaaaagccaacttactgttcttcgtaatcttcttattctacttattattattaagttggcttggagcTGCTGTGTGGAGcagctatcagtcaaaagtttggacaccccggcacccCAGCCAGGGCTTTTCAACCACCtattaactgcttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaacaacttagcaaccacctggaaaacgttagcaactgcctagcaaccagttagcaacaccttagcaaccaccaggaaaacgttagcaactgcctagcaacagcttagcaaccactttagaaatgaaagcaactgcctagcaaccacttagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccacttagcaacaccttaacaaccactaggaaaacattagcaactgcttagcaaccactttagaaattatagcaactgcctagcaaccagttagctacaccttagcaaccacta
>TU282975
tagcaaccacgtggaaaacgttagcaactgcctagcaaccactttaggaatgatagcaactgcctagcaaccacttagcaacaccttagcaacctccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaacaccttagcaaccaccccggataccatagcaaacaccttagcaaccacttagcaacaccttagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaaccacct
>TU282977
ctttagaaacgatagcaactgcctagcaaccacttagcaacaccttagcaaccacccggaaaacattagcaactgcctagcaaccacttggaaaacattagcaactgcctagcaaccacttagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttaacaaccactaggaaaatgttagcaactgcctagcaaccacttagcaaacactagcaaccacttagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaattatagcaactgcctagcaaccagttagcaacaccttagcaaccatgtggaatataagagcaactgcctagcaacagcttagcaaccacctggtatatgttagcaaccagttagcaacagctTAACGTTTCtag
>TU282978
tattattaagttggcttggaaaagccaacttactgttcttcgtaatcttcttattctacttattattattaagttggcttggagcTGCTGTGTGGAGcagctatcagtcaaaagtttggacaccccggcacccCAGCCAGGGCTTTTCAACCACCtattaactgcttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaacaacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagtaaccacctggaatacgttagcaacttcctagcaaccacttagcaaccactttagaaattatagcaactgcctagcaaccagtttgcaacaccttagcaaccaccaggaaaacgttagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttaacaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccatgtggaatatgttagcaacttcctagcaaccacttagcaaccactttagaaattataccaactgcctagcaaccagtttgcaacaccttagcaaccaccaggaaaacgttagcaactgccttagcaaccagttagcaaccactttagaaatgaaagcaactgcctagcaaccacttagaaaccacttagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttaacaaccactaggaaaatgttagcaactgcctagcaaccacttagcaaacactagcaaccacttagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaattatagcaactgcctagcaaccagttagcaacaccttagcaaccatgtggaatataagagcaactgcctagcaacagcttagcaaccacctggtatatgttagcaaccagttagcaacagctTAACGTTTCtag
>TU282982
tattattaagttggcttggaaaagccaacttactgttcttcgtaatcttcttattctacttattattattaagttggcttggagcTGCTGTGTGGAGcagctatcagtcaaaagtttggacaccccggcacccCAGCCAGGGCTTTTCAACCACCtattaactgcttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaacaacttagcaaccacctggaaaacgttagcaactgcctagcaaccagttagcaacaccttagcaaccaccaggaaaacgttagcaactgcctagcaacagcttagcaaccactttagaaatgaaagcaactgcctagcaaccacttagcaaccacttagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttaacaaccactaggaaaatgttagcaactgcctagcaaccacttagcaaacactttagaaatgatagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacattagcaactgcctagcaaccacttagcaaccactttagaaattatagcaactgcctagcaaccacttagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaattatagcaactgcctagcaaccagttagcaacaccttagcaaccatgtggaatataagagcaactgcctagcaacagcttagcaaccacctggtatatgttagcaaccagttagcaacagctTAACGTTTCtag
>TU282983
cacttagcaaccacatggaaaatgttagcaactgcctagcaaccacttagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaattatagcaactgcctagcaaccagttagcaacaccttagcaaccatgtggaatataagagcaactgcctagcaacagcttagcaaccacctggtatatgttagcaaccagttagcaacagctTAACGTTTCtag
>TU282990
GTTTTCCCATTgaaatgaatggggggcccagagttccatctcgcacacgagcagctctgcgcacggaaccccttctctcccctgctcctccagtactgtgagtgtatggaggagctgctgtatggagcagctatcagtcaaaagtttggacaccccggcaccccagccagggcttagcaaccacctattaactgcttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttaacaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagtaaccacctggaatacgttagcaacttcctagcaaccacttagcaaccactttagaaattatagcaactgcctagcaaccagtttgcaacaccttagcaaccaccaggaaaacgttggaaactgcctagcaacagcttagcaagcactttagaaatgaaagcaactgcctagcaaccacttaacaacaccttagcaaccaccgggaaaacattagcaactgcctagcaaccagtttgcaacaccttagcaaccaccaggaaaacgttggaaa
>TU282991
ggcaaccacttagcaaccacttagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacattagcaactgcctagcaaccacttagcaaccactttagaaattatagcaactgcctagcaaccacttagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaattatagcaactgcctagcaaccagttagcaacaccttagcaaccatgtggaatataagagcaactgcctagcaacagcttagcaaccacctggtatatgttagcaaccagttagcaacagctTAACGTTTCtag

Function

NR:

description
PREDICTED: signal recognition particle 54 kDa protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282971 False 963 lncRNA 0.46 3 27165176 27177419
TU282973 False 535 lncRNA 0.44 2 27166363 27181579
TU282975 False 337 lncRNA 0.50 2 27168325 27169626
TU282977 False 487 lncRNA 0.44 3 27165176 27167636
TU282978 True 1085 lncRNA 0.44 5 27165176 27181579
TU282982 False 923 lncRNA 0.44 2 27165176 27181579
TU282983 False 296 lncRNA 0.44 2 27165176 27180800
TU282990 False 580 lncRNA 0.49 3 27166724 27177419
TU282991 False 464 lncRNA 0.44 3 27165176 27176513

Neighbor

gene id symbol gene type direction distance location
LOC111195771 NA coding downstream 12876 27146036 ~ 27152300 (-)
LOC111195765 NA coding downstream 54138 27108299 ~ 27111038 (-)
LOC111195857 NA coding downstream 211703 26951689 ~ 26953473 (-)
LOC111195856 NA coding downstream 215806 26946294 ~ 26949370 (-)
kitlg NA coding downstream 349717 26792762 ~ 26815459 (-)
tmem231 tmem231 coding upstream 975188 28156767 ~ 28163353 (-)
adat1 NA coding upstream 995561 28177140 ~ 28193065 (-)
nup160 nup160,LOC107555692,LOC107756876 coding upstream 1129287 28310866 ~ 28367957 (-)
rpl27a rpl27a,LOC107687759,LOC108439055 coding upstream 1290942 28472521 ~ 28476854 (-)
psma1 psma1,LOC108439057,LOC107748950 coding upstream 1301912 28483491 ~ 28489434 (-)
G208487 NA non-coding downstream 154064 27008167 ~ 27011112 (-)
G208481 NA non-coding downstream 173248 26991493 ~ 26991928 (-)
LOC111195768 NA non-coding downstream 208726 26954767 ~ 26956450 (-)
LOC111195769 NA non-coding downstream 213852 26950914 ~ 26951324 (-)
G208455 NA non-coding downstream 271126 26885476 ~ 26894050 (-)
G208527 NA non-coding upstream 25231 27206810 ~ 27207649 (-)
G208529 NA non-coding upstream 26534 27208113 ~ 27210267 (-)
G208542 NA non-coding upstream 82997 27264576 ~ 27264959 (-)
G208551 NA non-coding upstream 953562 28135141 ~ 28135342 (-)
G208640 NA non-coding upstream 1027816 28209395 ~ 28209959 (-)
G208394 borcs5,LOC107753635 other downstream 508992 26655443 ~ 26656184 (-)
G208046 NA other downstream 952335 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 1047544 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 1076761 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 1078672 26079764 ~ 26086504 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 1034816 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 1480604 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 1601504 28783083 ~ 28860774 (-)
G209090 NA other upstream 2842382 30023961 ~ 30024550 (-)
G209127 NA other upstream 2980878 30162457 ~ 30162973 (-)

Expression


Co-expression Network