G208529


Basic Information

Item Value
gene id G208529
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 27208113 ~ 27210267 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU283013
tggttaatggcaaatcaaaaaggtcaatagaaccactaagctccgcccacttagattttttgctatttagcataatatgcaaaacctacttttgagaacttgtcctagggtcattgaccaatcctgtcatatttggtgtcaaacaactcAGCAGAGTCCCAACCTTAATAATTATcgaaaaaattgtgaaatttgtaaacaatatggccgccatatgcaaattaatcttaccgtagcacacccaaatttactctaacagctgtaacttttgaatgcttaaacctacactaatgccactttagacctttgatgccaacatgattctgaggtagcctgtcaatctgtgtagacatacgcctccagggggcggagccaaagctaaaaatctgtttctcaggaaccgtacaagctacgaagctctcctttggcatgtatcatctatggcctatgtTCTAATGTTTCacagaaggaaaatttgatatgcaaatttttgcgatcgctattagccaatcagattccagcaagcttttgacaggctaaacaatcaccaatcaggacgatacttataccctacatgtatatgagggccttctatcatccattaaaatatggcgttgattggcctcaagggggcgctatagcagaaaatcagttatatctaaaggtacaagtggcctaggcttgttattcttttttagttgtatactttgctgtagcctttacaactttgtaattacatgtatttaccaaaaatgcaaagattttcatcagtggccaaaagagtaaaaattgctcttttcgaacttgtctttaagtccttaatcaatcaaaacaaatttggtcttgatgcaatcttgagaccctgtaggtaaataattatcaaaaaaatcttgacattttaactatttgaggcccataaaccttgatcaaacatgtacgtgaaagccttttcagagttatttggccaaaactctgtcaaagtttaaaacatgccaaaactgttgaagctactaattaacaatgacatttgaagcacatgtgccaagtatgagacaaataagtcttcagtaggctctacagtgaaaaaataactattttcaatttattctatttatcgctattttccaacctaaatggacagaagacaggaacctttgaccctatcaacacacaaatttatacacatatatagactgatattgtgatcttgattgcaaattttgatattttgatatgattttgcaaatcagatattttttgcctctaatatggccaaagagcaacagccattttgtaggccataagcctgtattatcatttttttcaaacctaaatggtcagaagtcaggaacctttgaccctatcaacacacaaatttacatacatgtatatacagaccacttgatcatgagtaccaatttggagcccaatcggacttttcttctctttttaataaatagaaacacactgatagggaatgttctgtctttctgatagagtgatagatttccagcaggttatatgtggtctcttgctgcgctctggtggtcatttggtgaaacagctacaggtgaattattctaaattaaagctctgctgaacttattcaatcttgcttgtcttgcttattgaacatatttatccttcttgttcatgctggtcagccgcctgggtcattcttgtttatgctccacccacttaaattttttttaaatttgcataatatgcaaaacctacttttgagatcttgtccttggatccttgaccaatcatgacatgtttggtgtcaaacagttcagcagagcttactcctcaataattattaaaaaaatctttacatttataaacaatatggccgccatatgcaaatgagttctaccatggtgcagtaaaatgtctttaacacttataacttttgaatgcttaacctgatactaataccacttcagtcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283013 True 1953 lncRNA 0.36 2 27208113 27210267

Neighbor

gene id symbol gene type direction distance location
LOC111195771 NA coding downstream 55813 27146036 ~ 27152300 (-)
LOC111195765 NA coding downstream 97075 27108299 ~ 27111038 (-)
LOC111195857 NA coding downstream 254640 26951689 ~ 26953473 (-)
LOC111195856 NA coding downstream 258743 26946294 ~ 26949370 (-)
kitlg NA coding downstream 392654 26792762 ~ 26815459 (-)
tmem231 tmem231 coding upstream 946500 28156767 ~ 28163353 (-)
adat1 NA coding upstream 966873 28177140 ~ 28193065 (-)
nup160 nup160,LOC107555692,LOC107756876 coding upstream 1100599 28310866 ~ 28367957 (-)
rpl27a rpl27a,LOC107687759,LOC108439055 coding upstream 1262254 28472521 ~ 28476854 (-)
psma1 psma1,LOC108439057,LOC107748950 coding upstream 1273224 28483491 ~ 28489434 (-)
G208527 NA non-coding downstream 464 27206810 ~ 27207649 (-)
G208518 NA non-coding downstream 26534 27165176 ~ 27181579 (-)
G208520 NA non-coding downstream 33722 27170753 ~ 27174391 (-)
G208521 NA non-coding downstream 34861 27171163 ~ 27173252 (-)
G208519 NA non-coding downstream 37949 27168778 ~ 27170164 (-)
G208542 NA non-coding upstream 54309 27264576 ~ 27264959 (-)
G208551 NA non-coding upstream 924874 28135141 ~ 28135342 (-)
G208640 NA non-coding upstream 999128 28209395 ~ 28209959 (-)
G208647 NA non-coding upstream 1076265 28286532 ~ 28286897 (-)
G208649 NA non-coding upstream 1080342 28290609 ~ 28292211 (-)
G208394 borcs5,LOC107753635 other downstream 551929 26655443 ~ 26656184 (-)
G208046 NA other downstream 995272 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 1090481 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 1119698 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 1121609 26079764 ~ 26086504 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other upstream 1006128 28216395 ~ 28268369 (-)
LOC107197304 NA other upstream 1451916 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 1572816 28783083 ~ 28860774 (-)
G209090 NA other upstream 2813694 30023961 ~ 30024550 (-)
G209127 NA other upstream 2952190 30162457 ~ 30162973 (-)

Expression


Co-expression Network