wwp2 (wwp2,LOC108439047,LOC107740243,LOC107560080)


Basic Information

Item Value
gene id wwp2
gene name wwp2,LOC108439047,LOC107740243,LOC107560080
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28216395 ~ 28268369 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU283202
ATGACCGTAAGGAGGAAGTGCTGCTAGGCTAACCTTGCTAGCGGACGGCGCGGATAAAAGGGCTGTGATGTGATGGCAGCTGCCAGTGTGAGCAGACCTGGAGGAGTCCAGAGCATAGAAAAATCCCAGCTGATCTTGAAAGtgGTGTCTGCCAGGCCGCAGTCTCCAAAGCTTCCTGGCCGTCTGTCCCGCCTCAGCTCCTTCGTGGAAGTGACAGCTGATGGCCTGACCAGCGAGACCAAGAAAACCGGGAAACGCAGCGGTCAGCACGAGCTGCAGTGGAACGAGGACCTCACACTGAATGTGACTCCTCACAGTCAGTTGGATCTGAAACTTTGGAGCTGTCACACTCTGAGAAAAGAGCTGCTGGGCAGTGCCACTATTGACCTGCTGGACACTCTCCGAACACATGATGGCAGAAtggagAATGTGGAGCTCAGTCTGGCTCTGCAGACGGAGAATAAAGGCAGTGTTGTGTCGGGTGGAGAGCTGAATGTGTGTCTGGACGGTTTGGTTGTTGATTTGGGATCCCTGCCCAACATATCAGCAACAGACAGTGAGTTTTGCCTTTCAGtgcgcacgcacgcacacacacacacacacacacacacgcatacac
>XM_022684355.1
GCGCATACCGCCTCTCCTCGGTGTCACATGACCGTAAGGAGGAAGTGCTGCTAGGCTAACCTTGCTAGCGGACGGCGCGGATAAAAGGGCTGTGATGTGATGGCAGCTGCCAGTGTGAGCAGACCTGGAGGAGTCCAGAGCATAGAAAAATCCCAGCTGATCTTGAAAGtgGTGTCTGCCAGGCCGCAGTCTCCAAAGCTTCCTGGCCGTCTGTCCCGCCTCAGCTCCTTCGTGGAAGTGACAGCTGATGGCCTGACCAGCGAGACCAAGAAAACCGGGAAACGCAGCGGTCAGCACGAGCTGCAGTGGAACGAGGACCTCACACTGAATGTGACTCCTCACAGTCAGTTGGATCTGAAACTTTGGAGCTGTCACACTCTGAGAAAAGAGCTGCTGGGCAGTGCCACTATTGACCTGCTGGACACTCTCCGAACACATGATGGCAGAAtggagAATGTGGAGCTCAGTCTGGCTCTGCAGACGGAGAATAAAGGCAGTGTTGTGTCGGGTGGAGAGCTGAATGTGTGTCTGGACGGTTTGGTTGTTGATTTGGGATCCCTGCCCAACATATCAGCAACAGACAGTGAGTTTTGCCTTTCAGtgcgcacgcacgcacacacacacacacacacacacacgcatacacacatacacaaacacacacacacacacacacacaccaaatcaGTGTGTTTTGTTAAGGGGCTGGTGGATGCACTTCACTGTTGTAGAAAGACAGGAAGCTCACGCTTAAAAATCTGTACCACTGAGCTCAAATTACTCTGCTGTCAAattgtgtgggtgggtggacGGACGGACTCCACCCAACGCTCAGACAGGAAGGGCTGGAAAAAGACCCTTAACTGcttgtgcaaTGCAAGCCCCCGTAACAGaacacAGAGACACTCTGCGGTTGGATCTCGTGCAGAATCTCCCAGTGGCTCCAGAGGAACAGCTCTCATCTCTAACCGAGAATTAAATGGAGAaacctcctcacacacaccccgCCACACAGgtaaaggTGAACTCCCAGTAGAGGTGTTGGAGAATGGACGTGGTAGTCTGGGCCACACCCCTCCTCCCTCATCCCCATCTCTCAGGCCTGCAGGAAATGGTGCACCTGGTCCAGACAATTTAGCCCCGCCCCCAGCAGATACAGCCCCACCCATTGCTGATGACCAACCAACAGAGCCTGTGGTGGAGTCCTTACCTGCAGGATGGGAGCAGAGGGTTTTGTCTCATGGCCGAGTTTATTACGTCGACCACAACACCAAAACCACAACCTGGGAGCGGCCCCTTCCACCAGGgtgggAGAAGCGTGTGGACCAGCGTGGGCGGTTCTACTATGTCGATCACAACACCCGGACGACCACCTGGCAGCGGCCCACTCCCGAATCGGTCAGGAACTATGAGCAGTGGCAGAGCCAGCAGAGCCAGCTACAGGGGGCCATGCACCAGTTCAACCAGAGATACCTGTACCAATCCTCTGGAGCTCCTGTTGAGAATGATCCTCTGGGTGCTCTTCCTCCAGGATGGGAGAAACGGCAGGACAATGGGCGAGTTTACTTTGTCAACCACAACACTCGAACCACACAGTGGGAAGACCCTCGAACCCaaggGATGATACAGGAGCCTCCGCTGCCCCCTGGCTGGGAGATGAAGTACACCGCTGAGGGAGTGCGATATTTTGTAGATCACAATTCACGCACCACCACCTTCAAAGACCCACGGCCAGGCTTCGAGTCTGGctcacGGCAGGGTGGCTCTCCAGGCGCGTATGACCGCAGTTTCAGATGGAAATATCACCAGTTTCGTTTCTTGTGTCATTCTAACGCTCTGCCCAGTCACGTCAAGATCTCTGTGTCGAGACAGACTCTATTTGAGGACTCATTTCAGCAGATCATGAATATGAAACCATATGATCTGCGGCGGAGACTGTACATCATCATGAGGGGGGAGGAGGGGCTGGATTACGGCGGAATAGCCAGAGAGTGGTTCTTCTTGCTGTCCCACGAGGTCCTGAACCCCATGTACTGTCTGTTTGAATACGCTGGGAAGAATAACTACTGCTTGCAAATAAACCCCGCCTCTTCCATCAACCCCGACCACTTGAACTACTTCCGCTTCATCGGCCGCTTCATCGCCATGGCATTGTACCATGGCAAGTTCATAGATACTGGCTTCACTCTGCCTTTCTACAAGCGTATGCTTAACAAGAAGCCCACCCTGAAGGATCTGGAGTCCATAGACCCTGAGTTCTACAACTCCATCATGTGGGTCAAggaGAATGATCTGGAGGAGTGTGGGGTGGAGCTGTATTTCGCGCAGGACATGGAGATGCTGGGGAAAGTTTCAACCCACTCTCTGAAAGACGACGGAGAGAACGAACTAGTCACCAGTCACAACAAGGAGGAATACATTGGTTTGCTGACAGACTGGCGGTTCACTCGGGGTGTGGAGGAGCAGACCAAAGCCTTTCTGGATGGCTTTAATGAGGTGGTGCCACTCGAGTGGCTTCGCTACTTTGATGAGAAAGAGTTAGAGCTGATGCTGTGCGGGATGCAGGAGATTGATCTTAGCGACTGGCAGAAAAACACCATCTATCGCCATTACACCAAGAACAGCAAGCAGATCCACTGGTTCTGGCAGGTGGTGAAGGAGATGGATAATGAGAAGAGGATTCGGCTGCTGCAGTTCGTCACTGGAACCTGCAGGCTGCCTGTAGGGGGCTTCGCTGAGCTGATAGGGAGCAACGGACCACAGAAATTTTGCATAGACAAAGTGGGGAAAGAGACCTGGCTGCCACGGAGCCACACCTGCTTTAACCGGCTAGACCTGCCACCCTACCGGAACCTGGAGCAGCTGAGGGAGAAGCTCTTGTTTGCCATTGAGGAGACTGAGGGCTTCGGTCAGGAATGAGGAGCCCTTTAGATTAAAGCTGGGCGAGTCAGTCTCACTCACCTGCTGGGTCAGGTCGGGGATGGGACCAGCGCAACATAAACAGTACAATAACGTAGAATTTCCCATAAACATTAGGACTATTACAGATTTTAGCACGATATTGTTGATCATTAAAGACAGTTGATTTTAAGTTTAAGGCGCAGATATGAAATTAAATGCCACCTAGAGGCCGTCTCCTCCTCACCATGGCAACACTGGAGGCTGTTTAGTTCTGTGACCCGACAGCAGGATTCAGTCTCACAGAGATGGCAGGGTATATTACTATTTATACCTTTATGCATCCCGAGAGCCAAACACAGCACCCCCTGTTGTGGAGAAGATGAACTTTTACCTGAGCAGTTAGTAAAGAATTATACAGATATATCGCAACAGTGCCGTTAAATTTCATATGCATCTTCTCTGCAGTGTCTGGGAGAGAATCTTTTTATGTGgaacagactgtgtgtgtgtgtgtgtgtgtgtgtaagagagagaaagagagctttGAACAAGATGGAGCaatgtgattttatttgatttattttttggtaaTTGTGAAACTAGGCTATGCTGTACAGAGTGGATGTACAGCAGAATTCTGTTGTGGTTTGGGAGCAAAACGTTAAACAATccatgattaaaacaatatgTACA

Function

symbol description
wwp2 Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within roof of mouth development. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in brain; germ ring; head; pectoral fin bud; and tail bud. Orthologous to human WWP2 (WW domain containing E3 ubiquitin protein ligase 2).

NR:

description
NEDD4-like E3 ubiquitin-protein ligase WWP2

GO:

id name namespace
GO:0060021 roof of mouth development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K05630 WWP2, AIP2; NEDD4-like E3 ubiquitin-protein ligase WWP2

RNA

RNA id representative length rna type GC content exon number start site end site
TU283202 False 619 TUCP 0.54 5 28259304 28268342
XM_022684355.1 True 3594 mRNA 0.51 25 28216395 28268369

Neighbor

gene id symbol gene type direction distance location
adat1 NA coding downstream 23330 28177140 ~ 28193065 (-)
tmem231 tmem231 coding downstream 53042 28156767 ~ 28163353 (-)
LOC103031696 ano1,LOC105911290,LOC106573096 coding downstream 982805 27026494 ~ 27233590 (-)
LOC111195771 NA coding downstream 1064095 27146036 ~ 27152300 (-)
LOC111195765 NA coding downstream 1105357 27108299 ~ 27111038 (-)
nup160 nup160,LOC107555692,LOC107756876 coding upstream 42497 28310866 ~ 28367957 (-)
rpl27a rpl27a,LOC107687759,LOC108439055 coding upstream 204152 28472521 ~ 28476854 (-)
psma1 psma1,LOC108439057,LOC107748950 coding upstream 215122 28483491 ~ 28489434 (-)
LOC103040620 LOC108443074 coding upstream 334521 28602890 ~ 28622098 (-)
LOC103041235 NA coding upstream 400361 28668730 ~ 28683502 (-)
G208640 NA non-coding downstream 6436 28209395 ~ 28209959 (-)
G208551 NA non-coding downstream 81053 28135141 ~ 28135342 (-)
G208542 NA non-coding downstream 951436 27264576 ~ 27264959 (-)
G208417 NA non-coding downstream 995544 26789640 ~ 27220851 (-)
G208529 NA non-coding downstream 1006128 27208113 ~ 27210267 (-)
G208647 NA non-coding upstream 18163 28286532 ~ 28286897 (-)
G208649 NA non-coding upstream 22240 28290609 ~ 28292211 (-)
G208662 NA non-coding upstream 88245 28356614 ~ 28357085 (-)
G208665 NA non-coding upstream 104722 28373091 ~ 28381368 (-)
G208683 LOC108439052 non-coding upstream 150266 28418635 ~ 28421081 (-)
G208394 borcs5,LOC107753635 other downstream 1560211 26655443 ~ 26656184 (-)
G208046 NA other downstream 2003554 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 2098763 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 2127980 26086651 ~ 26088415 (-)
LOC111195762 NA other downstream 2129891 26079764 ~ 26086504 (-)
LOC107197304 NA other upstream 393814 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 514714 28783083 ~ 28860774 (-)
G209090 NA other upstream 1755592 30023961 ~ 30024550 (-)
G209127 NA other upstream 1894088 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 1933162 30201531 ~ 30318216 (-)

Expression


Co-expression Network