G208683 (LOC108439052)


Basic Information

Item Value
gene id G208683
gene name LOC108439052
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28418635 ~ 28421081 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU283242
CTGTCTCTGTACCTGTTCCGCCCTCTCCTCTGCTTGCTTCAGCTGCTCCCTCAGTGAGAGGATCTCAGAGAACCCTGCACTCCAGCTGGTGGGAGTGAGAGGCTTTCCCTCGAAGGAAATATTCTTCTGGATGCAAGCATCCACCAGCCTGCAGTTTGAGTCCGGCATCACGCTGCTCCCTTCAGtttcctcctgctcctccttcAGTGAGGGACACGCACTACCCGAGCTATTTCGTGTCCTCTGCAGCAGCTGTAGCTTCTCCATTAGTCGGCTGTTGGCCTCCTTCAGTGTCTCGCACTCCTCTTTCAAACCAGTACATTCCTCCCTCAGCAAGACAACGTCACcttcttttctctctttctccctccgtTGGCTCTTCATGGCGATTTCGGCCCTTAGAGTGACCGCCTCCTGCTCGTAGTCTTGGGCATTGGCCTCCACTCGGCCCAGTTCCACTCGGACCCGGCACAGCTCCTCCTGCAGGCTGGCGATGTCGTTCTCTCGCTCGGCCGCGCACTCCTCAGCCGCCTCCCTTAGCGCCTGCACCTCCTCCCTCACCAAACTCAGCTCCGTCTGAGCCTCAGCCAGTTCACTGTCCTTCAGCTCCTGTATCTGATCCAGCTCATCCTGAACACTCCGTAACTG

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 136-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283242 True 648 lncRNA 0.57 3 28418635 28421081

Neighbor

gene id symbol gene type direction distance location
nup160 nup160,LOC107555692,LOC107756876 coding downstream 50678 28310866 ~ 28367957 (-)
adat1 NA coding downstream 225570 28177140 ~ 28193065 (-)
tmem231 tmem231 coding downstream 255282 28156767 ~ 28163353 (-)
LOC111195771 NA coding downstream 1266335 27146036 ~ 27152300 (-)
LOC111195765 NA coding downstream 1307597 27108299 ~ 27111038 (-)
rpl27a rpl27a,LOC107687759,LOC108439055 coding upstream 51440 28472521 ~ 28476854 (-)
psma1 psma1,LOC108439057,LOC107748950 coding upstream 62410 28483491 ~ 28489434 (-)
LOC103040620 LOC108443074 coding upstream 181809 28602890 ~ 28622098 (-)
LOC103041235 NA coding upstream 247649 28668730 ~ 28683502 (-)
gal galn,gal,LOC108443068,LOC108268663 coding upstream 273085 28694166 ~ 28701575 (-)
G208665 NA non-coding downstream 37267 28373091 ~ 28381368 (-)
G208662 NA non-coding downstream 61550 28356614 ~ 28357085 (-)
G208649 NA non-coding downstream 126424 28290609 ~ 28292211 (-)
G208647 NA non-coding downstream 131738 28286532 ~ 28286897 (-)
G208640 NA non-coding downstream 208676 28209395 ~ 28209959 (-)
G208702 flnc,LOC108439053,LOC108439063 non-coding upstream 40447 28461528 ~ 28463518 (-)
LOC111195846 NA non-coding upstream 70270 28491351 ~ 28492233 (-)
LOC111195852 NA non-coding upstream 75370 28496451 ~ 28497291 (-)
LOC111195780 NA non-coding upstream 76810 28497891 ~ 28498363 (-)
G208716 NA non-coding upstream 77349 28498430 ~ 28498683 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other downstream 150266 28216395 ~ 28268369 (-)
G208394 borcs5,LOC107753635 other downstream 1762451 26655443 ~ 26656184 (-)
G208046 NA other downstream 2205794 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 2301003 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 2330220 26086651 ~ 26088415 (-)
LOC107197304 NA other upstream 241102 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 362002 28783083 ~ 28860774 (-)
G209090 NA other upstream 1602880 30023961 ~ 30024550 (-)
G209127 NA other upstream 1741376 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 1780450 30201531 ~ 30318216 (-)

Expression


Co-expression Network