G208702 (flnc,LOC108439053,LOC108439063)


Basic Information

Item Value
gene id G208702
gene name flnc,LOC108439053,LOC108439063
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28461528 ~ 28463518 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU283271
cgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtggtaCATACTGGGCACTCCAGCAATTCCTCTTTGCAGTCCGGTACCTCCGGCTCGGACCTTGTGTGGGCCCCCCTCGCCTAGGGGTCCTACAGTAAACTGGAAAGGGCTTCCAGGGACATGCTGACCACTGTACTTCACACTGACTGTGTGGGAGCCCATCTCAGTCGGTACGAAACGTACGCTATAGGTGCTGTCTCCACTTTCCACAAGCTCTGCATTCACAACCTTCCCCCCAGGGCTGGTCACCTGAGCCGTCATACCCTGCACATcctctttagatgtgagagatCCAAAGCAGCCCAGACTCTCTCTGCCCAGGATTGATCCGAAAATGTCTCTGAAAGGGTCTCTCCCTCCCACCTTCGTGCTCTCCTCCACATGGACCTCACGTTTGGTCTCTCCCCCGCGGGTCTTGCTGATTTCCGTGCGCTCGGTGCGTGTGTACGTGTGGCTGCTGCGTGTGAAGGTGCGGGTCAGACGCTCCTGAGCAGAAACCATCTGGAACC

Function

symbol description
flnc Enables ankyrin binding activity and identical protein binding activity. Predicted to be involved in actin cytoskeleton organization and muscle cell development. Located in cytosol and sarcolemma. Implicated in distal muscular dystrophy 4; hypertrophic cardiomyopathy 26; and myofibrillar myopathy 5.

NR:

description
filamin-C isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283271 True 540 lncRNA 0.57 2 28461528 28463518

Neighbor

gene id symbol gene type direction distance location
nup160 nup160,LOC107555692,LOC107756876 coding downstream 93571 28310866 ~ 28367957 (-)
adat1 NA coding downstream 268463 28177140 ~ 28193065 (-)
tmem231 tmem231 coding downstream 298175 28156767 ~ 28163353 (-)
LOC111195771 NA coding downstream 1309228 27146036 ~ 27152300 (-)
LOC111195765 NA coding downstream 1350490 27108299 ~ 27111038 (-)
rpl27a rpl27a,LOC107687759,LOC108439055 coding upstream 9003 28472521 ~ 28476854 (-)
psma1 psma1,LOC108439057,LOC107748950 coding upstream 19973 28483491 ~ 28489434 (-)
LOC103040620 LOC108443074 coding upstream 139372 28602890 ~ 28622098 (-)
LOC103041235 NA coding upstream 205212 28668730 ~ 28683502 (-)
gal galn,gal,LOC108443068,LOC108268663 coding upstream 230648 28694166 ~ 28701575 (-)
G208683 LOC108439052 non-coding downstream 40447 28418635 ~ 28421081 (-)
G208665 NA non-coding downstream 80160 28373091 ~ 28381368 (-)
G208662 NA non-coding downstream 104443 28356614 ~ 28357085 (-)
G208649 NA non-coding downstream 169317 28290609 ~ 28292211 (-)
G208647 NA non-coding downstream 174631 28286532 ~ 28286897 (-)
LOC111195846 NA non-coding upstream 27833 28491351 ~ 28492233 (-)
LOC111195852 NA non-coding upstream 32933 28496451 ~ 28497291 (-)
LOC111195780 NA non-coding upstream 34373 28497891 ~ 28498363 (-)
G208716 NA non-coding upstream 34912 28498430 ~ 28498683 (-)
G208778 NA non-coding upstream 181142 28644660 ~ 28646623 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other downstream 193159 28216395 ~ 28268369 (-)
G208394 borcs5,LOC107753635 other downstream 1805344 26655443 ~ 26656184 (-)
G208046 NA other downstream 2248687 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 2343896 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 2373113 26086651 ~ 26088415 (-)
LOC107197304 NA other upstream 198665 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 319565 28783083 ~ 28860774 (-)
G209090 NA other upstream 1560443 30023961 ~ 30024550 (-)
G209127 NA other upstream 1698939 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 1738013 30201531 ~ 30318216 (-)

Expression


Co-expression Network