LOC107197304


Basic Information

Item Value
gene id LOC107197304
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28662183 ~ 28695700 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU283363
TGTGTATCAGACTGCTCTTATACTTTGAGGTATTAAACAGCAGGTGGACAGAGTGCAAAGTCCAGAAGCTTCTTCTCCAGATCCAGAGCTTTCACTGAAACAGGCAGAAAGGGAATAATGTGGAGTCGCTCTCTCAGCCTCCTCAGAGCTCCACTGAGGCACAGTATCACCCAAAAAGCTCAAATCACCGATAAACCTGCCAAACACCACATTTCTGCAGGGGAGCAGGTCTTTGTGATGACTGTGATGTTTTTGACCATCCTGGGCCCGTCTGGATGGATTCTGGCACATCTGGAGGACTATAAGAAACGTCCCTGAGTGACCCGAATCCTCCTGCTGACTGTCCAGTCTATCTGAATTCCTCATTAAAAAGCCTGTTTAATCCCTGTGAT
>TU283364
gtgtttgtgtgtGTGGACAGAGTGCAAAGTCCAGAAGCTTCTTCTCCAGATCCAGAGCTTTCACTGAAACAGGCAGAAAGGGAATAATGTGGAGTCGCTCTCTCAGCCTCCTCAGAGCTCCACTGAGGCACAGTATCACCCAAAAAGCTCAAATCACCGATAAACCTGCCAAACACCACATTTCTGCAGGGGAGCAGGTCTTTGTGATGACTGTGATGTTTTTGACCATCCTGGGCCCGTCTGGATGGATTCTGGCACATCTGGAGGACTATAAGAAACGTCCCTGAGTGACCCGAATCCTCCTGCTGACTGTCCAGTCTATCTGAATTCCTCATTAAAAAGCCTGTTTAATCCCTGTGAT
>TU283365
GAACCTGACACTTCTTCTCCAGATCCAGAGCTTTCACTGAAACAGGCAGAAAGGGAATAATGTGGAGTCGCTCTCTCAGCCTCCTCAGAGCTCCACTGAGGCACAGTATCACCCAAAAAGCTCAAATCACCGATAAACCTGCCAAACACCACATTTCTGCAGGGGAGCAGGTCTTTGTGATGACTGTGATGTTTTTGACCATCCTGGGCCCGTCTGGATGGATTCTGGCACATCTGGAGGACTATAAGAAACGTCCCTGAGTGACCCGAATCCTCCTGCTGACTGTCCAGTCTATCTGAATTCCTCATTAAAAAGCCTGTTTAATCCCTGTGAT
>TU283366
cagatccagatCTTTCACTGAAACAGGCAGAAAGGGAATAATGTGGAGTCGCTCTCTCAGCCTCCTCAGAGCTCCACTGAGGCACAGTATCACCCAAAAAGCTCAAATCACCGATAAACCTGCCAAACACCACATTTCTGCAGGGGAGCAGGTCTTTGTGATGACTGTGATGTTTTTGACCATCCTGGGCCCGTCTGGATGGATTCTGGCACATCTGGAGGACTATAAGAAACGTCCCTGAGTGACCCGAATCCTCCTGCTGACTGTCCAGTCTATCTGAATTCCTCATTAAAAAGCCTGTTTAATCCCTGTGAT
>XM_015603785.2
AGGGCGGATCAGAATGAGTGTGGGTGTGTATCAGACTGCTCTTATACTTTGAGGTATTAAACAGCAGGTGGACAGAGTGCAAAGTCCAGAAGCTTCTTCTCCAGATCCAGAGCTTTCACTGAAACAGGCAGAAAGGGAATAATGTGGAGTCGCTCTCTCAGCCTCCTCAGAGCTCCACTGAGGCACAGTATCACCCAAAAAGCTCAAATCACCGATAAACCTGCCAAACACCACATTTCTGCAGGGGAGCAGGTCTTTGTGATGACTGTGATGTTTTTGACCATCCTGGGCCCGTCTGGATGGATTCTGGCACATCTGGAGGACTATAAGAAACGTCCCTGAGTGACCCGAATCCTCCTGCTGACTGTCCAGTCTATCTGAATTCCTCATTAAAAAGCCTGTTTAATCCCTGTGATTAATAAATGATGTGATATTACACTTTTA

Function

GO:

id name namespace
GO:0005746 mitochondrial respirasome cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU283363 False 392 lncRNA 0.47 2 28662211 28663900
TU283364 False 361 lncRNA 0.48 3 28662211 28695700
TU283365 False 334 lncRNA 0.49 3 28662211 28667204
TU283366 False 315 lncRNA 0.48 3 28662211 28664048
XM_015603785.2 True 444 mRNA 0.46 2 28662183 28663924

Neighbor

gene id symbol gene type direction distance location
LOC103040620 LOC108443074 coding downstream 40085 28602890 ~ 28622098 (-)
psma1 psma1,LOC108439057,LOC107748950 coding downstream 172749 28483491 ~ 28489434 (-)
rpl27a rpl27a,LOC107687759,LOC108439055 coding downstream 185329 28472521 ~ 28476854 (-)
nup160 nup160,LOC107555692,LOC107756876 coding downstream 294226 28310866 ~ 28367957 (-)
adat1 NA coding downstream 469118 28177140 ~ 28193065 (-)
LOC111195773 NA coding upstream 39486 28735186 ~ 28742593 (-)
LOC103034116 NA coding upstream 176140 28871840 ~ 28888885 (-)
LOC107197240 LOC107197240,LOC108270618,LOC107581863,LOC107714027,LOC107654092,LOC107102881,LOC102226886 coding upstream 323520 29019220 ~ 29020927 (-)
LOC103039163 sv2bb,LOC108444497,LOC107654137,LOC107583122,LOC107714041,LOC107720517 coding upstream 348275 29043975 ~ 29157568 (-)
LOC103042757 klhl25,LOC106560960,LOC107581825,LOC107714043 coding upstream 738779 29434479 ~ 29471880 (-)
G208778 NA non-coding downstream 15560 28644660 ~ 28646623 (-)
G208716 NA non-coding downstream 163500 28498430 ~ 28498683 (-)
LOC111195780 NA non-coding downstream 163820 28497891 ~ 28498363 (-)
LOC111195852 NA non-coding downstream 164892 28496451 ~ 28497291 (-)
LOC111195846 NA non-coding downstream 169950 28491351 ~ 28492233 (-)
G208827 NA non-coding upstream 19610 28715310 ~ 28715632 (-)
G208843 NA non-coding upstream 69983 28765683 ~ 28769030 (-)
G208849 NA non-coding upstream 96424 28792124 ~ 28794434 (-)
G208861 NA non-coding upstream 184284 28879984 ~ 28885542 (-)
G208865 ap3s2,LOC107654134,LOC102235539 non-coding upstream 218460 28914160 ~ 28923330 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other downstream 393814 28216395 ~ 28268369 (-)
G208394 borcs5,LOC107753635 other downstream 2005999 26655443 ~ 26656184 (-)
G208046 NA other downstream 2449342 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 2544551 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 2573768 26086651 ~ 26088415 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 87383 28783083 ~ 28860774 (-)
G209090 NA other upstream 1328261 30023961 ~ 30024550 (-)
G209127 NA other upstream 1466757 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 1505831 30201531 ~ 30318216 (-)
fstl5 fstl5,LOC107550871 other upstream 1818207 30513907 ~ 30803356 (-)

Expression


Co-expression Network