G208778


Basic Information

Item Value
gene id G208778
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28644660 ~ 28646623 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU283373
GATAATTTTCCAGAAGCACAGAAGAGTTAACAAGAGCAGGTAAACCAGAAATAAAATGCTGCTATGAAACACCATGTGGTGTCAGTACCCTATTAATATTACAGATTTCTATGCTTTAGCTGTTACTAAAGCCCAGGgtgaagaaataaatataattacagcAGCATACGACACATCATTCAGAACTAAAACAGAGCTTAAAATTGTGTCTGGCACTCAGAAGAACATATCCACCTCTATTATCAGAAGAAGAAAACTGAGGCTATGTTCACAATACAGGGCTGAGGTAGcccagatctgattttttatttgtctagacacaaatatatagttatttatttatttcaattggTTTGTTTTGTCTATACCTGAACAAATCAtgtgatgtatttatttatgtatatctcTGCTTTTTGGAATTGGATACACCCAAAAGCAAACATAATATTCAATTTCAttattgactaatatttaaGGCATGTTTACCAATGTTTATCAATGCCCAGTAGGTGGCAGCGGTGTATTAACAGTGTTAAGGCTAATGTATACTTCTGCAACAAATCTTCAGCATAGTTCGCATGAACCGTTCCAGTTTTTGTTAGATAAGCAATAGCTGATCtacactaactggccacttcaATAAAACCTCCCCATTGTTTCTTAATTATTAGCTTAACTTAATATATAGTACCACTATTTTTTCTTTAGGTCAGGAACCCACAGggccaccacagagcagcaattattattattgttattattattattattattattattattatttgggtggtgtcTCATTCTCAGCAGTGCAGTGGCATGGTGATGTTGTAAGAGGTGTAAGTGTAGGTTGTGCTGGTTTAAGGGGATCAGacaaacacctcagtgtcactccTGGTCTGAGAATAGCCATCGACCAAAAATATCCAGCTAGCTTCATGACATGGGCAGCATCCAGTGAGGACTGATGAAGGACTAAAATATGACCAACAAAAACTGTggagcaacagattcagagcttctgtctctgactttactttatccgCAAGGCGGACCAGTTAGGTCACATTAtcaccatgccagtgtcactgcagcaCTGAGAAAGTTCCTGAACATGTAAACTTATTTAGTCAgtggaaatgaaaaaaaaaatctatggaCAATGAGTATACAAACAAGAAAGGGATTTTAATGAAGTGCCTAGTTGTTGTATGTGAAGTGTTTTTCTGATTACATTTTGAATAGTAAACATGGGAAGTGATATGAGTTGAAGAAACATGCAAGCACTGTAATCATGCAGCCAATTCTGAGTGTACATTTATGCACAGAGCTGGATCACATCTAAACACCAGCATTGTGTGTCAATAAAGAACTCTGAATTTTACAGactgtaatgtgaacataaccTACATTTCTTCACCATCCACTGCTTCTTGGAGATGTCATGCAGGGTTCTAATGGAAATGTATCACATAAGAGCTGTACCGAGACCAGACCAGAAACAGCCAGCAGATTTAAAAACTataccaatcagaacagagatgTTGATATAGAAAATGCAGATAGTAATAACCtggtgtatctgtgtgtgtgtgtatctgtgtctgCGTGTTCCATTAAGAGGAAAACCATGCATATACAGTGTGGCAGACAGCATATTAGTTTTCCTTCTTCCGTTTTATCTACAGAGCTGCTGTGTCTATGTGATTGTATTCTCCAACCTACTCTTCTTACAGCTTGATAACATCATCAGCCTGCAATCGAGTGCTCAGTGAGGTGATCAGTCTGAGTGCTCTCCCTcccgctcctcctcctcctcattttGGTGGGGGTTGATGAAGGGCTGCTGGGACAAACAGTGCAGATCGTGCGGCTCCAGCTTGGTCATCTTGCCGTCTGCTCCAAGCTTCATAGGCTGAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283373 True 1922 lncRNA 0.39 2 28644660 28646623

Neighbor

gene id symbol gene type direction distance location
LOC103040620 LOC108443074 coding downstream 22562 28602890 ~ 28622098 (-)
psma1 psma1,LOC108439057,LOC107748950 coding downstream 155226 28483491 ~ 28489434 (-)
rpl27a rpl27a,LOC107687759,LOC108439055 coding downstream 167806 28472521 ~ 28476854 (-)
nup160 nup160,LOC107555692,LOC107756876 coding downstream 276703 28310866 ~ 28367957 (-)
adat1 NA coding downstream 451595 28177140 ~ 28193065 (-)
LOC103041235 NA coding upstream 22107 28668730 ~ 28683502 (-)
gal galn,gal,LOC108443068,LOC108268663 coding upstream 47543 28694166 ~ 28701575 (-)
LOC111195773 NA coding upstream 88563 28735186 ~ 28742593 (-)
LOC103034116 NA coding upstream 225217 28871840 ~ 28888885 (-)
LOC107197240 LOC107197240,LOC108270618,LOC107581863,LOC107714027,LOC107654092,LOC107102881,LOC102226886 coding upstream 372597 29019220 ~ 29020927 (-)
G208716 NA non-coding downstream 145977 28498430 ~ 28498683 (-)
LOC111195780 NA non-coding downstream 146297 28497891 ~ 28498363 (-)
LOC111195852 NA non-coding downstream 147369 28496451 ~ 28497291 (-)
LOC111195846 NA non-coding downstream 152427 28491351 ~ 28492233 (-)
G208702 flnc,LOC108439053,LOC108439063 non-coding downstream 181142 28461528 ~ 28463518 (-)
G208787 NA non-coding upstream 37961 28684584 ~ 28693510 (-)
G208827 NA non-coding upstream 68687 28715310 ~ 28715632 (-)
G208843 NA non-coding upstream 119060 28765683 ~ 28769030 (-)
G208849 NA non-coding upstream 145501 28792124 ~ 28794434 (-)
G208861 NA non-coding upstream 233361 28879984 ~ 28885542 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other downstream 376291 28216395 ~ 28268369 (-)
G208394 borcs5,LOC107753635 other downstream 1988476 26655443 ~ 26656184 (-)
G208046 NA other downstream 2431819 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 2527028 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 2556245 26086651 ~ 26088415 (-)
LOC107197304 NA other upstream 15560 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 136460 28783083 ~ 28860774 (-)
G209090 NA other upstream 1377338 30023961 ~ 30024550 (-)
G209127 NA other upstream 1515834 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 1554908 30201531 ~ 30318216 (-)

Expression


Co-expression Network