G208787


Basic Information

Item Value
gene id G208787
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28684584 ~ 28693510 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU283390
CTGACTTTAATGCATCATTGCAAAATAAGGACAGATCTGTAATATGCAGGTAATAATTAAGTATATAAACAGAGACTTGTATATagataatataacagattagaCCAAACATTCGAGACTCAATCCAATCATAACTATATCCCTTTTAAAATTAGAATTctatcagccacaacattaaagcCACTGAGGTCTATTTGAGCACAAAACCTCCCCCATCAGGCTGCATATTTTTGGAGTGTTCCTGTTATGCAGTAAGGCAGAACAGGGTCATAGGTGCCCAAGCATCTCTGATGCTCACAGAGGAGTGAGATGCCTTAAGAGGTCTTATGGAGcagaaacatacatacatacaacttTGGCCAAGTAGTTTTAGAGCTATGGCTATATTGTATTTGTCACACCATTTACAGACTGATGTTTGTATCAGGAAGAATAACGACTTAATGCAGATAATTTATAGGCCAGTAGCAATAGCTGTCCTTGATGTGAACACCCACAGATTTTGTGAATTTAGACAAAGTTGGGATCACcatggtattttttttccagtgtaatCCAAAAATTCCCCGTGGTCCTTGTCAGTCAGTCCAGAAATGATGGACAACAAAGACGAAATGCTCTCTTCTGCACTTAAAGGAGCATCAGGGCCTCCCATATCAGTGCGAACCCAGCCTGGATGAAGTACGGTGCACAGAATTCCATCAGACTCCAGGTCAGTCGCCAGGCATCGAGTCACCATGTTCAGACCAGACTTAGAGGCCCTGTAAGCATAACTTTTAAAGAAAGCTCCCTCGCCCCAATTGAGCTGGATGGAGCCTAAAGAAGAGGATATGTTAACCACAGCTGACTTGTGAATCCCCATCCCTCCACCTTCACCAGCCACTGCAGCGGTCTTTAACAGTGGCAGAAATGcCTTGGTCACAAACAGAGGAGCGACAGTGTTGCTCTCGAAGGTTTTCATCATGGCATCTCTGGTCACTGAGTTTAGGTCAGAATTGATGTGGATTGCAGCGTTATTAATTAAACAGTTGAGACCACCAGCACCCACTATGGTGGCCACTTCTTTGACAGCAGTGTCAATACTGGCCTCATTGACCACATCTAAAGGTATGACATGAATGCCTGTGTGAGACTCTGCAATCTGCC

Function

GO: NA

KEGG:

id description
ko04978 Mineral absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU283390 True 1146 lncRNA 0.43 5 28684584 28693510

Neighbor

gene id symbol gene type direction distance location
LOC103041235 NA coding downstream 1082 28668730 ~ 28683502 (-)
LOC103040620 LOC108443074 coding downstream 62486 28602890 ~ 28622098 (-)
psma1 psma1,LOC108439057,LOC107748950 coding downstream 195150 28483491 ~ 28489434 (-)
rpl27a rpl27a,LOC107687759,LOC108439055 coding downstream 207730 28472521 ~ 28476854 (-)
nup160 nup160,LOC107555692,LOC107756876 coding downstream 316627 28310866 ~ 28367957 (-)
gal galn,gal,LOC108443068,LOC108268663 coding upstream 656 28694166 ~ 28701575 (-)
LOC111195773 NA coding upstream 41676 28735186 ~ 28742593 (-)
LOC103034116 NA coding upstream 178330 28871840 ~ 28888885 (-)
LOC107197240 LOC107197240,LOC108270618,LOC107581863,LOC107714027,LOC107654092,LOC107102881,LOC102226886 coding upstream 325710 29019220 ~ 29020927 (-)
LOC103039163 sv2bb,LOC108444497,LOC107654137,LOC107583122,LOC107714041,LOC107720517 coding upstream 350465 29043975 ~ 29157568 (-)
G208778 NA non-coding downstream 37961 28644660 ~ 28646623 (-)
G208716 NA non-coding downstream 185901 28498430 ~ 28498683 (-)
LOC111195780 NA non-coding downstream 186221 28497891 ~ 28498363 (-)
LOC111195852 NA non-coding downstream 187293 28496451 ~ 28497291 (-)
LOC111195846 NA non-coding downstream 192351 28491351 ~ 28492233 (-)
G208827 NA non-coding upstream 21800 28715310 ~ 28715632 (-)
G208843 NA non-coding upstream 72173 28765683 ~ 28769030 (-)
G208849 NA non-coding upstream 98614 28792124 ~ 28794434 (-)
G208861 NA non-coding upstream 186474 28879984 ~ 28885542 (-)
G208865 ap3s2,LOC107654134,LOC102235539 non-coding upstream 220650 28914160 ~ 28923330 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other downstream 416215 28216395 ~ 28268369 (-)
G208394 borcs5,LOC107753635 other downstream 2028400 26655443 ~ 26656184 (-)
G208046 NA other downstream 2471743 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 2566952 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 2596169 26086651 ~ 26088415 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 89573 28783083 ~ 28860774 (-)
G209090 NA other upstream 1330451 30023961 ~ 30024550 (-)
G209127 NA other upstream 1468947 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 1508021 30201531 ~ 30318216 (-)
fstl5 fstl5,LOC107550871 other upstream 1820397 30513907 ~ 30803356 (-)

Expression


Co-expression Network