G208827


Basic Information

Item Value
gene id G208827
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28715310 ~ 28715632 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU283440
ccggtgaGTGGAGCCGACAAGCAGCGTaacgttaatacatctaatctgttccaccacctcaagcatcttcactacatacaatattttccttatactgactgaagcactttaatagattatgttgaaactaagttatttaaagtttatgaatcctttaggtttgtttatttgccgttgatatcatgttgaatacctcttgtattctggctgaagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283440 True 214 lncRNA 0.36 2 28715310 28715632

Neighbor

gene id symbol gene type direction distance location
gal galn,gal,LOC108443068,LOC108268663 coding downstream 13735 28694166 ~ 28701575 (-)
LOC103041235 NA coding downstream 31808 28668730 ~ 28683502 (-)
LOC103040620 LOC108443074 coding downstream 93212 28602890 ~ 28622098 (-)
psma1 psma1,LOC108439057,LOC107748950 coding downstream 225876 28483491 ~ 28489434 (-)
rpl27a rpl27a,LOC107687759,LOC108439055 coding downstream 238456 28472521 ~ 28476854 (-)
LOC111195773 NA coding upstream 19554 28735186 ~ 28742593 (-)
LOC103034116 NA coding upstream 156208 28871840 ~ 28888885 (-)
LOC107197240 LOC107197240,LOC108270618,LOC107581863,LOC107714027,LOC107654092,LOC107102881,LOC102226886 coding upstream 303588 29019220 ~ 29020927 (-)
LOC103039163 sv2bb,LOC108444497,LOC107654137,LOC107583122,LOC107714041,LOC107720517 coding upstream 328343 29043975 ~ 29157568 (-)
LOC103042757 klhl25,LOC106560960,LOC107581825,LOC107714043 coding upstream 718847 29434479 ~ 29471880 (-)
G208787 NA non-coding downstream 21800 28684584 ~ 28693510 (-)
G208778 NA non-coding downstream 68687 28644660 ~ 28646623 (-)
G208716 NA non-coding downstream 216627 28498430 ~ 28498683 (-)
LOC111195780 NA non-coding downstream 216947 28497891 ~ 28498363 (-)
LOC111195852 NA non-coding downstream 218019 28496451 ~ 28497291 (-)
G208843 NA non-coding upstream 50051 28765683 ~ 28769030 (-)
G208849 NA non-coding upstream 76492 28792124 ~ 28794434 (-)
G208861 NA non-coding upstream 164352 28879984 ~ 28885542 (-)
G208865 ap3s2,LOC107654134,LOC102235539 non-coding upstream 198528 28914160 ~ 28923330 (-)
G208899 NA non-coding upstream 219202 28934834 ~ 28937449 (-)
LOC107197304 NA other downstream 19610 28662183 ~ 28695700 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other downstream 446941 28216395 ~ 28268369 (-)
G208394 borcs5,LOC107753635 other downstream 2059126 26655443 ~ 26656184 (-)
G208046 NA other downstream 2502469 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 2597678 26103487 ~ 26117632 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 67451 28783083 ~ 28860774 (-)
G209090 NA other upstream 1308329 30023961 ~ 30024550 (-)
G209127 NA other upstream 1446825 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 1485899 30201531 ~ 30318216 (-)
fstl5 fstl5,LOC107550871 other upstream 1798275 30513907 ~ 30803356 (-)

Expression


Co-expression Network