G208843


Basic Information

Item Value
gene id G208843
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28765683 ~ 28769030 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU283458
TTACCTATGCACGtggcccaaaaaaaacacacaattcaGCTAGAATTCATTAAAAATTTGAATACATTACAGGGTCaaatcaaaaaaaggaaataaaatctACACCTCATAATAAAAATTTGCATCAACAATGAAAATGCATATCGGCAGAGCACTGGGTAAAATTCTTACGCTAATGTTTCATCTTAAAACAAATAGCGTATTTGtaaagtattttgtttctgGGCTGCAAAAATCAGAGAATGGATAAGGATAATCTCTACTGTTCCGATGTAAAGAACATTTATAATACTAATTGTACTAATAAACATAATGAAATATTCCTTAATACACTTACTTTTACTTAGCTAAATATGTTATTTGTGAATCATTACATCCCTAGTAAAGTCTTTAAACCAAAGCACCACAGTTAGCTAGCATATCccacctaaaatcccacacatCATTTCCACACACAGGCCAAGCACTGGCTAGTAAAAAATTAACAGGTTTCTAAAACATCTATTTAGCTCagactgagactgtgtgtggGGGAAAAGCAGCCTTTTGCACCTTGACTGGGATGGAAAGGAAAAACATGCAGGATGAGTACTCACTCCACAACATCGTCCTGATCGGCAAACTCTTCGTCATTGAAGCCAAACTGCTCAATAAAATTGGACGTCATTTGTTGCATCTGATAATCAGAAAAGGCTTGTTGCAAAGAGGAATCCTGATGGAAGCCGCTGTCTTTGAAATCTACCTCGTCATCGCTGGACGAGTGAATATG
>TU283459
CACAAGTTAATCCATTTGGGTTTAGTCTCAATTCCAAACCTCTATATTTTAATCATCCTGAACTGCTTCATGTAGGAAATATCTATTCTCGGCATTGGTAGATATGCATATTAAGTCAGATGCCTGCATCCAGGCATCCAGTTCCTCTCCTTACCCTCCCCGCTGTCCACTTCCATTCGGTCATCAGCGGGCGTGTTAGCTGGCTCGAATGGACCCTGCTTCACATCTTCCTCCTCAGAGTCTGTACTCTCCTCACTGTCGGTGCTCCCTGAGCTCCTGGGGCGTCGCTGAGCTTCCGGAGCAAACGTCACATCTTTCTCATCCCAAATATCCTCCTCATCTGATCCAGCATCTTCAAACTGCTGGATTTTCTCCTTGCAGCACGCTTCAAACATAGCCATGCTGGCACTTTCATTTGTATTCAAGGAAAAATTGATGTCTGATATTCTATCAAAGGGAATACTGCAAGGTTAAAGAGAACAGAGATTAGTTCAGTTAAGTCCGTTAGGCAGAGACACCACAACAGCTTACACACAGAGATAAAAACAGCACCCGGTCACCCACGATACACCACTGAACTTGTGTGCTATTAAACCGTCTATATTGTGCCAATATTAGGTAACTACAGGCATACAGTGCTTTTTCTTTGTCAGGAAAAAATGCAAAGCCTACATTAATTCCCCTTTAGTTCTTAGAATTACAAAGTTCCTACAGACATTCACATGAACAGGTTAAAAATTCCTCATACTGGCATCTCCACAACTGTAGAATAACACATAACCTCAGTGGTCTGTACAGCTGAATGGGGGAGAAAAATGGAAGAAAGCCAATCAGTTCCATCAGTAAATTACAATACCCGTAACAACTAaaagatacatttaaaaatgtttatttttacagtggtgCCACTCCACAGAACTGAAAAAGGTAcacatttttatgtgttttataaaacagtattACTGCAGCAATTTCAGAGACGTAATGTGATGTTTCTGTAACAAAATATTTAGTCAGTAATTCACTAGGTGTAAGGTGTCTGTAAggtataaaataagataatgcGTAGTGCAGGTACAGATTTATAAGGTGGTGTttcaaataagatttttttagtACTTACTGAAGAACTGAACAGAGTCAGTAAGTGTGTTTGTTGACACCCAGTGGCAGTCTGTATACCCTTTACATGAACAAAGGTTTGCATTCTGTGAAGCAGGCTTTACAATATGTTGCAACTTTTTTCACCTGTAAAACCTGATTTAACAGTAAATCTAACTCAACATTGAAGTActataatcttaaaaaaatctaagacTAGTTTGGAGACTTCACTTTGTAATTGCAATTTTACGACATTTCTTAGCATTCTAAATCAGCAGTGGCAATGAGGAATGATAGGGATGGCTAACAGCAGGTATAGGGACAGATGTATAGGGACATGAGTAAGGATGTAAACGGGTATGGGTCGGTAGGGCATAGATAGGTATGGGTAGGTGTGTATGGGCCTAAATAGGCAGTGGTATTTTTGGGGATGGTGAAAaacttgaaattttgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283458 False 769 lncRNA 0.36 2 28765683 28766695
TU283459 True 1558 lncRNA 0.40 3 28766765 28769030

Neighbor

gene id symbol gene type direction distance location
LOC111195773 NA coding downstream 23090 28735186 ~ 28742593 (-)
gal galn,gal,LOC108443068,LOC108268663 coding downstream 64108 28694166 ~ 28701575 (-)
LOC103041235 NA coding downstream 82181 28668730 ~ 28683502 (-)
LOC103040620 LOC108443074 coding downstream 143585 28602890 ~ 28622098 (-)
psma1 psma1,LOC108439057,LOC107748950 coding downstream 276249 28483491 ~ 28489434 (-)
LOC103034116 NA coding upstream 102810 28871840 ~ 28888885 (-)
LOC107197240 LOC107197240,LOC108270618,LOC107581863,LOC107714027,LOC107654092,LOC107102881,LOC102226886 coding upstream 250190 29019220 ~ 29020927 (-)
LOC103039163 sv2bb,LOC108444497,LOC107654137,LOC107583122,LOC107714041,LOC107720517 coding upstream 274945 29043975 ~ 29157568 (-)
LOC103042757 klhl25,LOC106560960,LOC107581825,LOC107714043 coding upstream 665449 29434479 ~ 29471880 (-)
LOC103023888 ntrk3a,LOC105018511,LOC108269325,LOC108438531 coding upstream 1292118 30061148 ~ 30110040 (-)
G208827 NA non-coding downstream 50051 28715310 ~ 28715632 (-)
G208787 NA non-coding downstream 72173 28684584 ~ 28693510 (-)
G208778 NA non-coding downstream 119060 28644660 ~ 28646623 (-)
G208716 NA non-coding downstream 267000 28498430 ~ 28498683 (-)
LOC111195780 NA non-coding downstream 267320 28497891 ~ 28498363 (-)
G208849 NA non-coding upstream 23094 28792124 ~ 28794434 (-)
G208861 NA non-coding upstream 110954 28879984 ~ 28885542 (-)
G208865 ap3s2,LOC107654134,LOC102235539 non-coding upstream 145130 28914160 ~ 28923330 (-)
G208899 NA non-coding upstream 165804 28934834 ~ 28937449 (-)
G208921 NA non-coding upstream 294469 29063499 ~ 29068424 (-)
LOC107197304 NA other downstream 69983 28662183 ~ 28695700 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other downstream 497314 28216395 ~ 28268369 (-)
G208394 borcs5,LOC107753635 other downstream 2109499 26655443 ~ 26656184 (-)
G208046 NA other downstream 2552842 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 2648051 26103487 ~ 26117632 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 14053 28783083 ~ 28860774 (-)
G209090 NA other upstream 1254931 30023961 ~ 30024550 (-)
G209127 NA other upstream 1393427 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 1432501 30201531 ~ 30318216 (-)
fstl5 fstl5,LOC107550871 other upstream 1744877 30513907 ~ 30803356 (-)

Expression


Co-expression Network