G208849


Basic Information

Item Value
gene id G208849
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28792124 ~ 28794434 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU283466
TGTGATTATTGTGATGCTGAGCTGTGTTTGGTTGTGGATTGTGTGAttattgtgatgctgagctgtgttttggtttagaTTGTGTGTCTGTTGTGATGCTGAACTGTGTTTGGTTGTGGATTGTGTGATTATTTTGATGCTGagctgtgttttggtttagaTTGTGTGATTGTTGTGATGCTGAGCTGTGTTTGGTTGTGGAttgtgtgattattgtgatgCTGAGCTGTGTTTGGGTGTGGATTGTTGTGATGCTGAGCTGTGTTTGGGTGTGGAttgtgtgattattgtgatgctgagctgtgtttgggtgtggattgtgtgattattgtgatgctgagctgtgtttgggtgtggattgtgtgattattgtgatgctgagctgtgtttgggtgtggattgtgtgattattgtgattcTGAGCTGTGTTTGGGTGTGGATTGTGTGATTATTGTGACAGCTGGCTGGGACACTCTGCTTCAGCTGTATTGCCTGTcccagtctgtattatttatgtGGCTGGCTGATTGTAATCGGACATGATTGCAGAACAGTGTGTGAAAGAatgacagcagagacagatgTCTGATCCATAAACCTCTACAgtgagattttaatctttttCCCCAAACCTTGTGCCAGACAGAGTTGCAAAAACTAAACaacggggagagagagagagatttcatCAGCAGTCATTTAAtctcagaaaagaaaaataactgattgattaaaacacTGAAGGAGAATAAACTTCCTCAGCTTCTCACACACAACTCTAGGTTCAGAATAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283466 True 794 lncRNA 0.41 3 28792124 28794434

Neighbor

gene id symbol gene type direction distance location
LOC111195773 NA coding downstream 49531 28735186 ~ 28742593 (-)
gal galn,gal,LOC108443068,LOC108268663 coding downstream 90549 28694166 ~ 28701575 (-)
LOC103041235 NA coding downstream 108622 28668730 ~ 28683502 (-)
LOC103040620 LOC108443074 coding downstream 170026 28602890 ~ 28622098 (-)
psma1 psma1,LOC108439057,LOC107748950 coding downstream 302690 28483491 ~ 28489434 (-)
LOC103034116 NA coding upstream 77406 28871840 ~ 28888885 (-)
LOC107197240 LOC107197240,LOC108270618,LOC107581863,LOC107714027,LOC107654092,LOC107102881,LOC102226886 coding upstream 224786 29019220 ~ 29020927 (-)
LOC103039163 sv2bb,LOC108444497,LOC107654137,LOC107583122,LOC107714041,LOC107720517 coding upstream 249541 29043975 ~ 29157568 (-)
LOC103042757 klhl25,LOC106560960,LOC107581825,LOC107714043 coding upstream 640045 29434479 ~ 29471880 (-)
LOC103023888 ntrk3a,LOC105018511,LOC108269325,LOC108438531 coding upstream 1266714 30061148 ~ 30110040 (-)
G208843 NA non-coding downstream 23094 28765683 ~ 28769030 (-)
G208827 NA non-coding downstream 76492 28715310 ~ 28715632 (-)
G208787 NA non-coding downstream 98614 28684584 ~ 28693510 (-)
G208778 NA non-coding downstream 145501 28644660 ~ 28646623 (-)
G208716 NA non-coding downstream 293441 28498430 ~ 28498683 (-)
G208861 NA non-coding upstream 85550 28879984 ~ 28885542 (-)
G208865 ap3s2,LOC107654134,LOC102235539 non-coding upstream 119726 28914160 ~ 28923330 (-)
G208899 NA non-coding upstream 140400 28934834 ~ 28937449 (-)
G208921 NA non-coding upstream 269065 29063499 ~ 29068424 (-)
G208939 NA non-coding upstream 376245 29170679 ~ 29170900 (-)
LOC107197304 NA other downstream 96424 28662183 ~ 28695700 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other downstream 523755 28216395 ~ 28268369 (-)
G208394 borcs5,LOC107753635 other downstream 2135940 26655443 ~ 26656184 (-)
G208046 NA other downstream 2579283 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 2674492 26103487 ~ 26117632 (-)
G209090 NA other upstream 1229527 30023961 ~ 30024550 (-)
G209127 NA other upstream 1368023 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 1407097 30201531 ~ 30318216 (-)
fstl5 fstl5,LOC107550871 other upstream 1719473 30513907 ~ 30803356 (-)
G209224 NA other upstream 2304410 31098844 ~ 31099861 (-)

Expression


Co-expression Network