G208865 (ap3s2,LOC107654134,LOC102235539)


Basic Information

Item Value
gene id G208865
gene name ap3s2,LOC107654134,LOC102235539
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28914160 ~ 28923330 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU283499
TCTGGACAAGTTTTAATTACAGAACATAAAgcatacagtataaataaacatatcaTTGATTGGTAATATTTGTAGATTTGGCTATATGAACAGGGGCAGAAATATGATTCCTGGCACTGGAATGTTGccacattgaacaattacaaataaacaaaacaatctacaaaactacaaaaatcaACAACATTAAAAATGGCTGGCTGAAATGAACGACACATGTAACACATTTTAACCGTGGAATAGTAATTTTGGACTGTGCTGCGCTCCAGTGTAACAGTCTGTAGGTTATGGTCAGCAGTCAGTCCAAGAAGATCATGAAGAGGGTATTTTATCTGTATAGACTCTGCCTAAAAACGTGCTTTACAGTAGCTGCTAATGTTAGAAAGGACACGTTTAACAGaatgctataaaaaaaatcccttttagGCGTAATATGAGATTGTAGATCCACCTCACCTTATCACAATACCTATATTtaaagtgttattaatatatattcaccctaatgagctacagtctctcattagggtgaatataaTTAACATGTTGCAGGTCGATACTGCAATATACACTaaggtggagctacagtctctcattagggtgaataGGAGTTCTATAAAAGCTATCCAAACAAACAATTGTAGCTATGAAAGCATGTTTGTAGACGGAGCCTAAACAGGTCAGTCAGTGTTGATATTCAGGATTCATCGTAAGAGAAGCAGACTCAGAATGGGGACAGGCTGGGTACTTTAATGTTGATGTCTCCTATGTTGATGTTGCGAGGGATTTCTGGAAGGTTCATGTTCTTGACTGCTGAGACGGCCCGTGCAGGAGCAGCAGACAGCCCACCCTCAGATTTTTCCATCCGGTTTTGCAGCTCCACCTGGGCCACAATCTCATTCATATTGGTCTCCAGCACCATCCCACCCATTACCACCTCCTGCAGAATATAATgcacTTTGTCCATGTGGAAGATCAGGTCCAGCTCACAGACATTTTCAAAGCATTTATCCAGTGTCTCCACAAACACctgtatgAGATCTAAAATCCCCAGTTCACTCTCTGATGAGTCGacacaaaacacaaagtaaagTGTAGCGTAGTGTCTGTAAATCAGCTTGTAGTCTGAGCCACCAATCAGACTTCCTCCTTCAAGGAAATTGCAGACGTTGTCATCCCTCTTGGAAACCAGATGAAATGTCTCTCGAATTATCTGCTGCTGCATGTCCTCTGCGAAATACTGGTAGAATCTGATGAGCCTGGGTTTCCCATGGTTATTAAATATAAGAATAGCCTTGATCATCTTTCTACTTCGCGCTTTGCTGCTCTAGCtctcaaataaattatttttcagtCATCAAAACACCCAACGTAACAGGCTTTAACGCTTCCGtatatttttcacaataaaagTCCTTAGGCGCTGGATTATGTCACcttttcctgtttttaatttatatatatatatatatatatataaatatatat

Function

symbol description
ap3s2 Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within intracellular protein transport. Predicted to be part of membrane coat. Predicted to be active in intracellular membrane-bounded organelle. Orthologous to human AP3S2 (adaptor related protein complex 3 subunit sigma 2).

NR:

description
AP-3 complex subunit sigma-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283499 True 1488 lncRNA 0.39 6 28914160 28923330

Neighbor

gene id symbol gene type direction distance location
LOC103034116 NA coding downstream 25275 28871840 ~ 28888885 (-)
LOC111195773 NA coding downstream 171567 28735186 ~ 28742593 (-)
gal galn,gal,LOC108443068,LOC108268663 coding downstream 212585 28694166 ~ 28701575 (-)
LOC103041235 NA coding downstream 230658 28668730 ~ 28683502 (-)
LOC103040620 LOC108443074 coding downstream 292062 28602890 ~ 28622098 (-)
LOC107197240 LOC107197240,LOC108270618,LOC107581863,LOC107714027,LOC107654092,LOC107102881,LOC102226886 coding upstream 95890 29019220 ~ 29020927 (-)
LOC103039163 sv2bb,LOC108444497,LOC107654137,LOC107583122,LOC107714041,LOC107720517 coding upstream 120645 29043975 ~ 29157568 (-)
LOC103042757 klhl25,LOC106560960,LOC107581825,LOC107714043 coding upstream 511149 29434479 ~ 29471880 (-)
LOC103023888 ntrk3a,LOC105018511,LOC108269325,LOC108438531 coding upstream 1137818 30061148 ~ 30110040 (-)
LOC103038627 LOC108424200,LOC107694978,LOC107680612,LOC108269149 coding upstream 1244771 30168101 ~ 30195378 (-)
G208861 NA non-coding downstream 28618 28879984 ~ 28885542 (-)
G208849 NA non-coding downstream 119726 28792124 ~ 28794434 (-)
G208843 NA non-coding downstream 145130 28765683 ~ 28769030 (-)
G208827 NA non-coding downstream 198528 28715310 ~ 28715632 (-)
G208787 NA non-coding downstream 220650 28684584 ~ 28693510 (-)
G208899 NA non-coding upstream 11504 28934834 ~ 28937449 (-)
G208921 NA non-coding upstream 140169 29063499 ~ 29068424 (-)
G208939 NA non-coding upstream 247349 29170679 ~ 29170900 (-)
G208976 NA non-coding upstream 425480 29348810 ~ 29353755 (-)
G208977 NA non-coding upstream 432801 29356131 ~ 29359313 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other downstream 53386 28783083 ~ 28860774 (-)
LOC107197304 NA other downstream 218460 28662183 ~ 28695700 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other downstream 645791 28216395 ~ 28268369 (-)
G208394 borcs5,LOC107753635 other downstream 2257976 26655443 ~ 26656184 (-)
G208046 NA other downstream 2701319 26212058 ~ 26212841 (-)
G209090 NA other upstream 1100631 30023961 ~ 30024550 (-)
G209127 NA other upstream 1239127 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 1278201 30201531 ~ 30318216 (-)
fstl5 fstl5,LOC107550871 other upstream 1590577 30513907 ~ 30803356 (-)
G209224 NA other upstream 2175514 31098844 ~ 31099861 (-)

Expression


Co-expression Network