CI01000009_14052206_14053489


Basic Information

Item Value
gene id CI01000009_14052206_14053489
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 14051969 ~ 14053953 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_14052206_14053489.mRNA
ATATTCAGCATTGCAATGTCTCCTTTTTCTTATTCCTTTTTCAACAAGTGGTCTGTCTCGGCCCCTGTCAGCAGCATAGGAAGTCTTCACAATGCATTTCACAATGTCTCAGCTATTCCCGAATGCATCGGTGTCTCAGTGTCTTACCAATATAGCCCAAGGACAGGGACACTATGTGCGCTGCTTTTTTCATCAGTCTGGTCAAAATACTGAACACCAGAAGCATCATCAATCAAATACACAGACTTTGGTAAAGTGGGATTCAGTCGGTAAACCAGCAAATCTGTCTTCACTTCACATTTAAAAAGAGAAAAACCTCCACCTTTATATCTAAAATAACCCTTGTTATTAATTTATATAAAATCCATTGAGTGTTAATGACCCATGAGGTATTTTAATGTGAATTCCCAAGTTAAGCTTGCACCTGTAGGAATGTCATGATTGTTTGCTGAGAGACGCTCAGGATGGGGAATTGGAATGGGAATAATGGGACAGACTCAATTCAGAAAGATGAATTGCTCACAAACACGCACACCGCCTGCAGACAGGATGGTCCATCCAGAGACAACGGCACCACGCCAATACAAAGGACTCCAGCACAGCGGGGACACTCTCCAAGGACTTATGTAACGCCAGTTCGCCTTCATAAAATATTCCCCAATTTTTCTCAATTATGTTTCAAATGTAGGACAGACATTGGCACAGTGATGCATGTGTTTTGGGATTGTGATAAAATCAAAGTTAACATGTGGATAGGTCAGGCCGCTACTCTTTTACCTCTGGAAAAACTAACTTACGATCTGCATCAAAGATCAGATGTTTTCTGGCACACTTGGTCTTCTTTGTGGAACCTTCTGGAAGATGTTCAGTGACTGATTTATCCTTTTAATTATTGGTCTATAAAATGTCCCTGTTATTTATTTACTTTGATATGCTCTGTTGTATTGTTTCTTATTATTATTATTTCTTATTATTGTTTTGTTTTTGCATTTTATATGCCTACGTATGAACATGTATATCCAAAGATTGTAAGATGATATGGCTTATATGGCTGTATGTGCTGTTATGAGATACCAGTACCACTGTGTTGTGTTATTGTAAAAAATAAA

Function

NR:

description
Retrovirus-related Pol polyprotein LINE-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_14052206_14053489.mRNA True 1109 mRNA 0.38 3 14051969 14053953

Neighbor

gene id symbol gene type direction distance location
CI01000009_14012800_14024940 ITGB2 coding downstream 26738 14011950 ~ 14025231 (-)
CI01000009_13990326_14004387 VIL1 coding downstream 47143 13989732 ~ 14004826 (-)
CI01000009_13983271_13988001 NA coding downstream 63621 13983208 ~ 13988348 (-)
CI01000009_13975122_13976026 NA coding downstream 74845 13975099 ~ 13978614 (-)
CI01000009_13963789_13974296 DNAJC10 coding downstream 77673 13962949 ~ 13974296 (-)
CI01000009_14201347_14205288 NA coding upstream 147162 14201115 ~ 14205887 (-)
CI01000009_14248805_14255014 NA coding upstream 193690 14247643 ~ 14255775 (-)
CI01000009_14342067_14344332 NA coding upstream 288034 14341987 ~ 14344934 (-)
CI01000009_14476688_14573629 HDAC4 coding upstream 421771 14475724 ~ 14573629 (-)
CI01000009_14626182_14652953 NA coding upstream 571878 14625831 ~ 14653259 (-)
G59491 NA non-coding downstream 12076 14039324 ~ 14039893 (-)
G59488 NA non-coding downstream 111341 13939445 ~ 13940628 (-)
G59489 NA non-coding downstream 120288 13883972 ~ 13931681 (-)
G59470 NA non-coding downstream 187366 13826486 ~ 13864603 (-)
G59472 NA non-coding downstream 231973 13799998 ~ 13819996 (-)
G59552 NA non-coding upstream 21671 14075624 ~ 14075833 (-)
G59602 NA non-coding upstream 110939 14164892 ~ 14214853 (-)
G59610 NA non-coding upstream 122050 14176003 ~ 14176444 (-)
G59626 NA non-coding upstream 134432 14188385 ~ 14189163 (-)
G59636 NA non-coding upstream 145958 14199911 ~ 14201000 (-)
G59490 NA other downstream 14096 14033564 ~ 14037873 (-)
G59097 NA other downstream 1762451 12288217 ~ 12289518 (-)
CI01000009_08858198_08860555 NA other downstream 5191406 8856310 ~ 8860563 (-)
G55814 NA other downstream 5623957 8425821 ~ 8428012 (-)
G59811 NA other upstream 808444 14862397 ~ 14887464 (-)
G59941 NA other upstream 1078151 15132104 ~ 15132503 (-)
CI01000009_15318811_15390382 TNS1 other upstream 1322307 15318811 ~ 15390382 (-)
CI01000009_15654061_15662554 ARPC2 other upstream 1592822 15653760 ~ 15663026 (-)

Expression


Co-expression Network