G208977


Basic Information

Item Value
gene id G208977
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 29356131 ~ 29359313 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU283662
tcaaATACTGATAAATAGAGCTGTTATAAAAAGCTTGAatcaaatcacaaaaaaaaaatccacaactAATACTTTTACAATTTGTACATTAAAGATATTTACAAAATTGTCGTTTTGCCCTTCTTTACACAACATTTCAAAGTGAAATTAAAACGGTACCATTTAGTAAATACCCTTTAATTTTCAGAGCACACTGAAGCACATTGAAGCAGGAAGCGCTGCAGTCTGAGTGATGGATTAGTTATCTAGtgcatttcattctgtaaatctgtaaattcCCCAACACATATCAGTTCACAAATATATAATGAGCATGAGCTGGGTTTTTATTAGAATTAATACAATTcccctttttcatttttgttcccTGATGTGGGCGTTTGTTGAGGTGTTGAATGAGAAGGCATTGAGTCGGTTAAGGCATGTTAAAGATATTTGCATTTACTTATATTACAATTACTGGCAGCACTATTGGAAGGATACTTACACATGGGCTTCATTACATTTATGAACACCTTATGCCAGCATTAATAGGATGATGAAGAACATATAAGGTAGAATCTCAATGGAATGATATCCAAGAGCATTTACATGAAACTAGCAGACATTTGTTCCATTCATATTACCCGTTATAAAGAAGAAATTATTTAGAAATTTTGGAAGATAGAATTGgattattatttaactaattTCTACACATTTTTAACATGGAGAAAGATGGTAAAATATGGAAACTTCACTCGATACTCTCATTACTCATCAGAACTCAAACCCCAGTGGCCTGTATGTGCCTGTACTTTAATTCCTCATACTCTCGCATATTGTCATTGTCCTATTAAAAACAtctgatttttagttttattgatttttagtttactacatcattttaCACTCTGCCAAACTTTTTTGATGAACGAACCAAtggaaactcttcaaaatgacatgaaataatatctttttacattgaggttttttctctctcctgtaaagttgctgttttggagataagtgtttttcattggacagcatcgatatttttttaaccacagttattgaaaaatatataggtactaaataattagtagacctaaaattaaagttttgagagtttgaaatacaaaaaaaaaaaacaacagtacttTAGGATTGTTgcattaactaaaatatatatttttttgcagtatagcagtaaagtaaaaatcacactgcactgacttaatGACCTTTAAACTAAACTAGCGTATTCTGATTACATCACTgttgaagtaaaataaagtaatacactatattgccagaAGTATCTGCTCGCCTATTCTGTGTTTGTTGATGTAAGACTTCCATGAAGCTCTTTACACTCTGCTGTTCTTGAGCTAGAAAGAACCAGAAAGTTGGTTCCTCTAATCCTCATTATCCACTGACCCCACTCTGTTGCTGTCATTTTACaatgacagagcacagagttgCTGTCGtttccagtctcttccactgcgttataatatcactgacagttggctgtggaatatttagtagtgaggaaattttatgactggacttgttgcacaggtggaTCCATGCTGTAATTCCCTGAGCTTCCAAGAGCGACCCAATCTTCATTAATGTTTTTAGAATAAGTCTGGATGCTAGGtacttggttttatacacctgtggccatggaatTGATTGGAACCTAAGTTCAATTATTTGGATGGGTGAGTAAATTCCAGGGTTCATAAACgatttaaccaataaattttttcatgccttcaaatctttttcatgccttcaaggcacattttcatgaccgtacgattttttaaaacatcagtgcagacacagACAAggaaaccaaaaatcaactaaactataatcaaaactgattaaagtaggtctaaaatgaatcagataaaatgttgacacacaatctttaatgataaaatgtgtgtcagatcctgagagctccattgtgtagagactaaattactgaattgtttctgagctgatgtatttgttagctaaaaaatagattttctccatcgataaactgaaacacagatTTGTAGAGCaattttccatgacttttccaaaactttctgggtatttttatttttccaaaacttattcaGGCCTgggaattttcattttttaattccaTGAATTTTCCAGGAAATACCTTTGGCAATACAGTGTATTTCCATGTGAAGTTACTGTAtatgatattttatcatattatttGTATGCTCTTACACTAATGTTAAATCTGGTAAACATGCTTTCCAGTCTGAATTTACAATGCTTCATAAGACTGATACAAATAAAACCAATGCCCCATTTTAGTTTACATCATAATTTACCTCAAACAAAACCATCTAAGATCATCTTATGAATGCTGACATAAGATGTTAGTAAATTAAGTTATTCAGtgcttatgaatatattatgtaaatatCCTCTGAATAAAGGCTGGGATCAGTTTTCTATGTGACTCTATTCCTCCATAAGCTAAAAGGCACTCAGTGTGTGCTGATATGTGGCcgctctggagcagataaacattacatgaacagaaaaaaatggttCTACATTGTTTGGCAGCAGTATGAATGAAAGCAGCCAGAGCGCCCCCTGGTGGTCTAGGTAGTTTAGCACCATGCTGCAATTATACTTAAAAGAAAAGATACATGGCAAAAAACGTAGACGTTACACAAGTGGTGTCTTCTGATCATCAAAGCTATGACACATTCAACAGCGCCAACCAATAGGAAGGCAGGAGAGGACTGGATTGTCTTTCCATTGTTATTTTTCCCCATTTGAAACTTTAATTCATGtcattctctctgtttctgacaGGCTAAATTGTTTCCCAGAGTAACAGAAATGCCCGGCCTGCAGGCGAGGACTCCTTCACTGGACCCAGATTTCAAACGATCTGGGCAAAATAACAGAAACACTAACATACGCATTTATACACTGGCGTATTTCCTCCAATCAAAGCTGAGCAGACAGTGTCTTCActgcaaataataatatattagcaAGTGAAATCATCTTAAATCTAGTCtgaatattgttatttatcAATTTTTGTGTGTCGTCAGCATATTTAAGTTGTGTTTTACtataatttaacacattttaagcattttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283662 True 3144 lncRNA 0.34 2 29356131 29359313

Neighbor

gene id symbol gene type direction distance location
LOC103039163 sv2bb,LOC108444497,LOC107654137,LOC107583122,LOC107714041,LOC107720517 coding downstream 198563 29043975 ~ 29157568 (-)
LOC107197240 LOC107197240,LOC108270618,LOC107581863,LOC107714027,LOC107654092,LOC107102881,LOC102226886 coding downstream 335204 29019220 ~ 29020927 (-)
LOC103034116 NA coding downstream 467246 28871840 ~ 28888885 (-)
LOC111195773 NA coding downstream 613538 28735186 ~ 28742593 (-)
gal galn,gal,LOC108443068,LOC108268663 coding downstream 654556 28694166 ~ 28701575 (-)
LOC103042757 klhl25,LOC106560960,LOC107581825,LOC107714043 coding upstream 75166 29434479 ~ 29471880 (-)
LOC103023888 ntrk3a,LOC105018511,LOC108269325,LOC108438531 coding upstream 701835 30061148 ~ 30110040 (-)
LOC103038627 LOC108424200,LOC107694978,LOC107680612,LOC108269149 coding upstream 808788 30168101 ~ 30195378 (-)
LOC103021866 LOC108424141,LOC107550873,LOC108269199,LOC107694980,LOC107756464,LOC107741111 coding upstream 1003980 30363293 ~ 30390245 (-)
LOC103031457 NA coding upstream 1895034 31254347 ~ 31260863 (-)
G208976 NA non-coding downstream 2376 29348810 ~ 29353755 (-)
G208939 NA non-coding downstream 185231 29170679 ~ 29170900 (-)
G208921 NA non-coding downstream 287707 29063499 ~ 29068424 (-)
G208899 NA non-coding downstream 418682 28934834 ~ 28937449 (-)
G208865 ap3s2,LOC107654134,LOC102235539 non-coding downstream 432801 28914160 ~ 28923330 (-)
G209058 NA non-coding upstream 162772 29522085 ~ 29984304 (-)
LOC111195775 NA non-coding upstream 287553 29646866 ~ 29647575 (-)
G209067 NA non-coding upstream 349810 29709123 ~ 29713238 (-)
G209082 NA non-coding upstream 524333 29883646 ~ 29885174 (-)
G209089 NA non-coding upstream 662786 30022099 ~ 30022721 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other downstream 495357 28783083 ~ 28860774 (-)
LOC107197304 NA other downstream 660431 28662183 ~ 28695700 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other downstream 1087762 28216395 ~ 28268369 (-)
G208394 borcs5,LOC107753635 other downstream 2699947 26655443 ~ 26656184 (-)
G208046 NA other downstream 3143290 26212058 ~ 26212841 (-)
G209090 NA other upstream 664648 30023961 ~ 30024550 (-)
G209127 NA other upstream 803144 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 842218 30201531 ~ 30318216 (-)
fstl5 fstl5,LOC107550871 other upstream 1154594 30513907 ~ 30803356 (-)
G209224 NA other upstream 1739531 31098844 ~ 31099861 (-)

Expression


Co-expression Network