G209121


Basic Information

Item Value
gene id G209121
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 30155074 ~ 30156513 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU283828
CATAAGTGTGTTGTATCTCTATGAGACAGGTAGTTATAGATgttaaagcattataaacactCTTCTCTGGTATTTACCAAACACATGTTGGAACATCACGAAAGCCACCATGATGGAACTTTACCAAACATATGTCTTTGTATTTCATCACGCACAACATGTTAGAACATGTAAGCAATCCTGTATGATAAAGCATGCTAGAATATCCCcaaataactttaaaacatcATCAAACCTAGCACCCTAGAACATTTACCAAAAGTTTAAACATCACCACACCTGACGTGGAGGATGTACTATTAAATCAGAagaaatcagagaaaaaaagggaacaTCACAAACCAACTGTGTTGTAATATCACCAAACTTTAGCAAAACCACCAAAACCAACATGTTCGAAAATCTTCAAGCCCAATAGTTTAGAACATAACCAACCTCACCAATTAGAAAATCAACAAATCTAACATGTCAGGACCACACCAAACACAACATGTGCAATCATAACCAAGCTTCACATGTCAGAACATGACCAAGCCCAATAGATTAGAACATCACCAAACCTCACCCGAAATCCTCACCCGAAAATCAACAAACCTAATATGTTAGATGATAACCAAGCTTCACATGTCAAAACATCATCAATACTTCTGTGTCAAAGAATGTCACCAAGCCTCACATGTCAAAACATTACCAAGCCCAATAGGTTAGAACTTCACCAAACCTCATCAGTTAGAAAATCAACAAACCTAACATGTCAGGATATCACCAAACTCAATGTTAGATCATCATGTCAGGTCATCACCAACCCCCCACATCAGAACATGACCAAACCCAATATTACAAACTTAACCATAACCAACATGCTGAAATACCACCAAATATCAACAACCCCAACGTCAGATCATCACCAAACCTCACCTTTTCTAACGTAATATGTTAGAACATTACCAAACCTGTTAGAACATCTCCATACCTAAAGCTCCATCATCTCCATCACCAAAACCAGCCTGTCAACACATCACCAGACCTCACCTGTTAGATCTTCTCCATACCCAGTGTTAGAACATCACTAAAtccaaaatatttaaacattgatATATCCTCACCAAACCTCACCTGTTggtacatcaccaaacacaaggTGTTTAAATATCATCACACTCATATTAGAATATTTTGGAATGCACATGTGCTACAAAGTCAGTAAAACTAAATCTGTTTTGCCTTGCACTGTGAACACAGTCTTAGGATGTAATACGTAGGACTTTATCACCATCTATACTGCTCTTGCTGGAaatcacttccagaccactggCACTGCATTAGTCATTTTGATATAACTCTTATTTTCCTCCAATCTAGTTCCAGGCAGTGTTCAGTGTACTCCATCATATACAGCATGACAGCACCACCCATCAGGCAGGCTCGGGCAGCGAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283828 True 1440 lncRNA 0.39 1 30155074 30156513

Neighbor

gene id symbol gene type direction distance location
LOC103023888 ntrk3a,LOC105018511,LOC108269325,LOC108438531 coding downstream 45034 30061148 ~ 30110040 (-)
LOC103042757 klhl25,LOC106560960,LOC107581825,LOC107714043 coding downstream 683194 29434479 ~ 29471880 (-)
LOC103039163 sv2bb,LOC108444497,LOC107654137,LOC107583122,LOC107714041,LOC107720517 coding downstream 997506 29043975 ~ 29157568 (-)
LOC107197240 LOC107197240,LOC108270618,LOC107581863,LOC107714027,LOC107654092,LOC107102881,LOC102226886 coding downstream 1134147 29019220 ~ 29020927 (-)
LOC103034116 NA coding downstream 1266189 28871840 ~ 28888885 (-)
LOC103038627 LOC108424200,LOC107694978,LOC107680612,LOC108269149 coding upstream 11588 30168101 ~ 30195378 (-)
LOC103021866 LOC108424141,LOC107550873,LOC108269199,LOC107694980,LOC107756464,LOC107741111 coding upstream 206780 30363293 ~ 30390245 (-)
LOC103031457 NA coding upstream 1097834 31254347 ~ 31260863 (-)
LOC103031775 NA coding upstream 1108058 31264571 ~ 31266955 (-)
LOC103032100 NA coding upstream 1120664 31277177 ~ 31282581 (-)
G209104 NA non-coding downstream 26413 30128178 ~ 30128661 (-)
G209089 NA non-coding downstream 132353 30022099 ~ 30022721 (-)
G209058 NA non-coding downstream 170770 29522085 ~ 29984304 (-)
G209124 NA non-coding upstream 3364 30159877 ~ 30160330 (-)
LOC111195840 NA non-coding upstream 167049 30323562 ~ 30327730 (-)
G209166 NA non-coding upstream 280805 30437318 ~ 30437788 (-)
G209177 NA non-coding upstream 585913 30742426 ~ 30742669 (-)
G209184 NA non-coding upstream 599793 30756306 ~ 30757507 (-)
G209090 NA other downstream 130524 30023961 ~ 30024550 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other downstream 1294300 28783083 ~ 28860774 (-)
LOC107197304 NA other downstream 1459374 28662183 ~ 28695700 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other downstream 1886705 28216395 ~ 28268369 (-)
G208394 borcs5,LOC107753635 other downstream 3498890 26655443 ~ 26656184 (-)
G209127 NA other upstream 5944 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 45018 30201531 ~ 30318216 (-)
fstl5 fstl5,LOC107550871 other upstream 357394 30513907 ~ 30803356 (-)
G209224 NA other upstream 942331 31098844 ~ 31099861 (-)
G209256 NA other upstream 1117355 31273868 ~ 31274402 (-)

Expression


Co-expression Network