G209208


Basic Information

Item Value
gene id G209208
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 31020100 ~ 31020380 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU283941
ctgaaacacctgtcattttagtgtgggaggtttcatggctaaattggagcagcctggtggccaatcttcattaattgcacattgcaccagtaagagcagagtgtgaaggttcaattagcagggtaagagcacagttttgctccaaatattgcaatgcacacaacattatgggtgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctgccgcatctgtgaccaagacagcaagtctttgtgatgtatcaagagccacggtatccagg

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU283941 True 281 lncRNA 0.45 1 31020100 31020380

Neighbor

gene id symbol gene type direction distance location
LOC103021866 LOC108424141,LOC107550873,LOC108269199,LOC107694980,LOC107756464,LOC107741111 coding downstream 629855 30363293 ~ 30390245 (-)
LOC103038627 LOC108424200,LOC107694978,LOC107680612,LOC108269149 coding downstream 824722 30168101 ~ 30195378 (-)
LOC103023888 ntrk3a,LOC105018511,LOC108269325,LOC108438531 coding downstream 910060 30061148 ~ 30110040 (-)
LOC103042757 klhl25,LOC106560960,LOC107581825,LOC107714043 coding downstream 1548220 29434479 ~ 29471880 (-)
LOC103039163 sv2bb,LOC108444497,LOC107654137,LOC107583122,LOC107714041,LOC107720517 coding downstream 1862532 29043975 ~ 29157568 (-)
LOC103031457 NA coding upstream 233967 31254347 ~ 31260863 (-)
LOC103031775 NA coding upstream 244191 31264571 ~ 31266955 (-)
LOC103032100 NA coding upstream 256797 31277177 ~ 31282581 (-)
rapgef2 rapgef2 coding upstream 269754 31290134 ~ 31382522 (-)
LOC103044229 LOC103044229,LOC108430909 coding upstream 1056211 32076591 ~ 32116564 (-)
G209189 NA non-coding downstream 182360 30811716 ~ 30837740 (-)
G209184 NA non-coding downstream 262593 30756306 ~ 30757507 (-)
G209177 NA non-coding downstream 277431 30742426 ~ 30742669 (-)
G209166 NA non-coding downstream 582312 30437318 ~ 30437788 (-)
LOC111195840 NA non-coding downstream 692370 30323562 ~ 30327730 (-)
G209236 NA non-coding upstream 196235 31216615 ~ 31217148 (-)
G209254 NA non-coding upstream 251456 31271836 ~ 31272348 (-)
G209261 NA non-coding upstream 264772 31285152 ~ 31285360 (-)
G209301 NA non-coding upstream 495579 31515959 ~ 31516197 (-)
G209304 NA non-coding upstream 498652 31519032 ~ 31519276 (-)
fstl5 fstl5,LOC107550871 other downstream 216744 30513907 ~ 30803356 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other downstream 701884 30201531 ~ 30318216 (-)
G209127 NA other downstream 857127 30162457 ~ 30162973 (-)
G209090 NA other downstream 995550 30023961 ~ 30024550 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other downstream 2159326 28783083 ~ 28860774 (-)
G209224 NA other upstream 78464 31098844 ~ 31099861 (-)
G209256 NA other upstream 253488 31273868 ~ 31274402 (-)
G209303 NA other upstream 497053 31517433 ~ 31517892 (-)
gar1 gar1,LOC106513240,LOC107756508,LOC107680945,LOC107586061 other upstream 1608914 32629294 ~ 32639929 (-)
G209458 NA other upstream 1935235 32955615 ~ 32956085 (-)

Expression


Co-expression Network