G209406


Basic Information

Item Value
gene id G209406
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 32805299 ~ 32807680 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU284181
ccatatttacaaaataaactaacaaaacactaaggaagaactataaagaaaaaggttactgaaacaaacactatacaccagaagataaactaaaagactgaaacaaacaggccaaaataacaaagaaacaaactacataaagcaaacctggaaaactgaagacaaaaaacacaacaggtctGAGGCTAAAGAGGGAACAGAGAACAAGACGAGACAGAACTACGACGGTGGAACTATTGACATAACAGGAGACTGGACTTTGGACgagaactgagactggacaggggacggagactggacgaaagactggacagggggctggacgttagactgggacagagactggactggGGACGAGAACATAGACTGGACAAGTggcttagactggacagaggacttGGGCTGGACAAACTGGGACTGGACAAGACAGGACGAGGGAACCGGGACAAATACACTTACTGGGACTGACACAAATATGGTGACAGGGACGGGAACgggaacaaacacagacacggggaccaggacagggagagacatgggtaCAAACAAAATaggatgcccaggactggcaaaagttCTTGAGGTCTGTGAgaccagcctgggcacagttctggggGTTGGCCTGGTAGCTGGTCTGGGGGTgtacaaagttctgggagcaggcacagggtcagag
>TU284183
ccatatttacaaaataaactaacaaaacactaaggaagaactataaagaaaaaggttactgaaacaaacactatacaccagaagataaactaaaagactgaaacaaacaggccaaaataacaaagaaacaaactacataaagcaaacctggaaaactgaagacaaaaaacacaacaggtctgaggctaaacaaaacattaaaacacgaTCTGGAAAGATTAACAGGACAcagtcaaacaaaaagcgcgacagagaacaatggatcacatgaggtatttatacacaggcacacactagggacacctgtggaagtaatgagggggcggagttacaaatgagacacaaggtgacaacactaatggcttgggcagggctagggcggagacagaacaataacaaaacaatgccatgtgctcaaaaaagcacatggctggaaacacaagacaggaaaacagggcaggagcacagaaaaccaaaagagggaaaaacacaggacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU284181 True 676 lncRNA 0.48 3 32806795 32807680
TU284183 False 498 lncRNA 0.40 2 32805299 32807680

Neighbor

gene id symbol gene type direction distance location
LOC111195776 NA coding downstream 178723 32614920 ~ 32626576 (-)
LOC103043395 adh5,LOC103043395,LOC108425010,LOC107680974,LOC107730660,LOC107696300,LOC107586060,LOC107756510 coding downstream 195391 32602209 ~ 32609908 (-)
LOC103043705 LOC107680975,LOC107730661,LOC107696296 coding downstream 204288 32592697 ~ 32601011 (-)
LOC103044229 LOC103044229,LOC108430909 coding downstream 688735 32076591 ~ 32116564 (-)
rapgef2 rapgef2 coding downstream 1422777 31290134 ~ 31382522 (-)
grhpr grhpr,grhpra,LOC107550900,LOC107756505,LOC107730677,LOC105908753,LOC107680659 coding upstream 992422 33800102 ~ 33812322 (-)
mrpl18 mrpl18 coding upstream 1033307 33840987 ~ 33844951 (-)
LOC111195843 NA coding upstream 1045389 33853069 ~ 33854406 (-)
pdgfc pdgfc coding upstream 1101429 33909109 ~ 34001611 (-)
fam198b fam198b coding upstream 1403885 34211565 ~ 34220540 (-)
LOC111195778 NA non-coding downstream 101230 32703448 ~ 32704069 (-)
LOC111195779 NA non-coding downstream 103829 32700061 ~ 32701470 (-)
G209329 NA non-coding downstream 1059305 31745585 ~ 31745994 (-)
G209304 NA non-coding downstream 1286023 31519032 ~ 31519276 (-)
G209301 NA non-coding downstream 1289102 31515959 ~ 31516197 (-)
G209433 NA non-coding upstream 21182 32828862 ~ 32829063 (-)
G209440 NA non-coding upstream 78010 32885690 ~ 32886052 (-)
G209452 NA non-coding upstream 145347 32953027 ~ 32953517 (-)
G209546 NA non-coding upstream 941497 33749177 ~ 33749516 (-)
G209579 NA non-coding upstream 974063 33781743 ~ 33782007 (-)
gar1 gar1,LOC106513240,LOC107756508,LOC107680945,LOC107586061 other downstream 165370 32629294 ~ 32639929 (-)
G209303 NA other downstream 1287407 31517433 ~ 31517892 (-)
G209256 NA other downstream 1530897 31273868 ~ 31274402 (-)
G209224 NA other downstream 1705438 31098844 ~ 31099861 (-)
fstl5 fstl5,LOC107550871 other downstream 2001943 30513907 ~ 30803356 (-)
G209458 NA other upstream 147935 32955615 ~ 32956085 (-)
G209529 LOC103042373,LOC108425009,LOC108268400,LOC107730658,LOC107756507,LOC107667842,LOC107550901 other upstream 794419 33602099 ~ 33604989 (-)
G209640 NA other upstream 1363087 34170767 ~ 34212849 (-)
G209660 NA other upstream 1427238 34234918 ~ 34274593 (-)
egf NA other upstream 1812781 34620461 ~ 34656484 (-)

Expression


Co-expression Network