CI01000009_14342067_14344332


Basic Information

Item Value
gene id CI01000009_14342067_14344332
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 14341987 ~ 14344934 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_14342067_14344332.mRNA
ACTGCAAACTACCTCATTAGTTTTGCATTATTTTCACTTGACATAAACAGGTTTCATTGTATTTCTCTCCAAACTTGGCAGCATAAAAACAATGTTGTTTTAGAGAATGCAAAACTGTAGTTACAATTTGAATGTCAAGGGAAATCTTTATGGAAAAAAGTTTGGTTCCACTTTATTTTAAGGTGATATAGTTACATTGTACATATGTACTGAGTAAAATAAATTAACTACATGTACTTATAGAGTTACAGTTAGGGTTAGTTACTTGTTTTTAAAAAAAATATATTTTATTTAAAGCGTTTAGGGTTAGTTACTTGTAATTATGCATAATTTACTGTTATTACTATAGTAAGTAAAGTGTTACCAAAAGTTTACTTTCACTTTGTAATAGCATTTTATACAGGGTAAATTTGTAGGTGAAAAGTTGATTGTAGTTCTCATTAATACTGTCAAGTTAAATTATAAAACAAATAGTTTCTCAAATTAAAATGCTGTATTATTCAAGTGAACATTTGTCACTCATTGCTATCAGAACAAAGTTTCAGAAGCACGTTTGTCCAGTTCAACGGCTCTTGTCATCTATTTGACAGAATGTCATTGCAATGACAGAAGGTGGACCCAACCTTAAAAACTGTCTAATATTCAGAGCATTAGTCACCTTTGACTTTCTTTTTCTTCTCTCTCTCACTTTTCTCTCTCAGCGCAGTAGAACATACTCTAATCATGCAGCACTGGATGCTCTGAAAAAGGCTTTTGCTGAACATCCAACTATTCAAAGGCTGGCCAAATCTGATTTCATCATGCTCAATTTAGTGGTAAAGTACAAATTTGTGAAATATTCAGCAGACATTGGACACGAGACCACCGATGAACACTTGGCCCCTGATGGCTTTTATGTCCCCAGGATCATGTTTGTTGATCCCTCACTGACTGTGCGAGCTGACATTGTTGGAAAGTATGCCAACCGAATGTACACGTATGAGCCAGCCGACATGGACTTCTTGGCAGAGAACATGATAAAAGCCAAGATCCTGCTTAAGAGTGAACACGACAAACATGTTGATCTGTGATGGATAGAGAACAGCTTACCTCTTTCAAGACTTGCGCACTGGTTTCTTTGTGCAACTAGCAATATGAAACTTTGAATAAA

Function

NR:

description
Zgc:165571 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_14342067_14344332.mRNA True 1150 mRNA 0.35 5 14341987 14344934

Neighbor

gene id symbol gene type direction distance location
CI01000009_14248805_14255014 NA coding downstream 86212 14247643 ~ 14255775 (-)
CI01000009_14201347_14205288 NA coding downstream 136100 14201115 ~ 14205887 (-)
CI01000009_14052206_14053489 NA coding downstream 288034 14051969 ~ 14053953 (-)
CI01000009_14012800_14024940 ITGB2 coding downstream 316756 14011950 ~ 14025231 (-)
CI01000009_13990326_14004387 VIL1 coding downstream 337161 13989732 ~ 14004826 (-)
CI01000009_14476688_14573629 HDAC4 coding upstream 130790 14475724 ~ 14573629 (-)
CI01000009_14626182_14652953 NA coding upstream 280897 14625831 ~ 14653259 (-)
CI01000009_14763341_14773678 NA coding upstream 418278 14763212 ~ 14773681 (-)
CI01000009_14776978_14779978 CX43.4 coding upstream 431925 14776859 ~ 14781953 (-)
CI01000009_14905408_14907785 NA coding upstream 559555 14904489 ~ 14908077 (-)
G59602 NA non-coding downstream 127134 14164892 ~ 14214853 (-)
G59636 NA non-coding downstream 140987 14199911 ~ 14201000 (-)
G59626 NA non-coding downstream 152824 14188385 ~ 14189163 (-)
G59610 NA non-coding downstream 165543 14176003 ~ 14176444 (-)
G59552 NA non-coding downstream 266154 14075624 ~ 14075833 (-)
G59590 NA non-coding upstream 269164 14614098 ~ 14711193 (-)
G59583 NA non-coding upstream 337935 14682869 ~ 14684152 (-)
G59754 NA non-coding upstream 371184 14716118 ~ 14716332 (-)
G59768 NA non-coding upstream 391083 14736017 ~ 14736281 (-)
G59490 NA other downstream 304114 14033564 ~ 14037873 (-)
CI01000009_13975122_13976026 NA other downstream 363373 13975099 ~ 13978614 (-)
G59097 NA other downstream 2052469 12288217 ~ 12289518 (-)
CI01000009_08858198_08860555 NA other downstream 5481424 8856310 ~ 8860563 (-)
G55814 NA other downstream 5913975 8425821 ~ 8428012 (-)
G59811 NA other upstream 517463 14862397 ~ 14887464 (-)
G59941 NA other upstream 787170 15132104 ~ 15132503 (-)
CI01000009_15318811_15390382 TNS1 other upstream 1031326 15318811 ~ 15390382 (-)
CI01000009_15654061_15662554 ARPC2 other upstream 1301841 15653760 ~ 15663026 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G86804 NA non-coding NC_047599.1 CM018545.1 21938992 ~ 21941289 (+)