G209546


Basic Information

Item Value
gene id G209546
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 33749177 ~ 33749516 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU284357
caaacaaatagggaggctgacaaaaacaaacgaggaaaacaataaggaactaaactagatagataataactaacaaacaaagcgggagtagataaacaaagaaataaactaataactaaagctagacaATGAACTAAACAGAGCAAGGATAATTACAAGGATTAAACTAAGAtagacacggagagaaacactgagagaaacactgagagaaacactgagaggaaatCTGGGAACACGggaagacaaacgacaggagacagtgcaaagaccgacagaggacaagtaacagaggaagtctatttaactaaacaggaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU284357 True 316 lncRNA 0.37 2 33749177 33749516

Neighbor

gene id symbol gene type direction distance location
LOC111195776 NA coding downstream 1122601 32614920 ~ 32626576 (-)
LOC103043395 adh5,LOC103043395,LOC108425010,LOC107680974,LOC107730660,LOC107696300,LOC107586060,LOC107756510 coding downstream 1139269 32602209 ~ 32609908 (-)
LOC103043705 LOC107680975,LOC107730661,LOC107696296 coding downstream 1148166 32592697 ~ 32601011 (-)
LOC103044229 LOC103044229,LOC108430909 coding downstream 1632613 32076591 ~ 32116564 (-)
rapgef2 rapgef2 coding downstream 2366655 31290134 ~ 31382522 (-)
grhpr grhpr,grhpra,LOC107550900,LOC107756505,LOC107730677,LOC105908753,LOC107680659 coding upstream 50586 33800102 ~ 33812322 (-)
mrpl18 mrpl18 coding upstream 91471 33840987 ~ 33844951 (-)
LOC111195843 NA coding upstream 103553 33853069 ~ 33854406 (-)
pdgfc pdgfc coding upstream 159593 33909109 ~ 34001611 (-)
fam198b fam198b coding upstream 462049 34211565 ~ 34220540 (-)
G209452 NA non-coding downstream 795660 32953027 ~ 32953517 (-)
G209440 NA non-coding downstream 863125 32885690 ~ 32886052 (-)
G209433 NA non-coding downstream 920114 32828862 ~ 32829063 (-)
G209406 NA non-coding downstream 941497 32805299 ~ 32807680 (-)
LOC111195778 NA non-coding downstream 1045108 32703448 ~ 32704069 (-)
G209579 NA non-coding upstream 32227 33781743 ~ 33782007 (-)
G209571 NA non-coding upstream 47786 33797302 ~ 33799205 (-)
G209576 NA non-coding upstream 81704 33831220 ~ 33834676 (-)
G209575 NA non-coding upstream 85782 33835298 ~ 33838826 (-)
LOC111195844 NA non-coding upstream 321598 34071114 ~ 34073594 (-)
G209529 LOC103042373,LOC108425009,LOC108268400,LOC107730658,LOC107756507,LOC107667842,LOC107550901 other downstream 144188 33602099 ~ 33604989 (-)
G209458 NA other downstream 793092 32955615 ~ 32956085 (-)
gar1 gar1,LOC106513240,LOC107756508,LOC107680945,LOC107586061 other downstream 1109248 32629294 ~ 32639929 (-)
G209303 NA other downstream 2231285 31517433 ~ 31517892 (-)
G209256 NA other downstream 2474775 31273868 ~ 31274402 (-)
G209640 NA other upstream 421251 34170767 ~ 34212849 (-)
G209660 NA other upstream 485402 34234918 ~ 34274593 (-)
egf NA other upstream 870945 34620461 ~ 34656484 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other upstream 960255 34709771 ~ 34759091 (-)
G210059 NA other upstream 2960904 36710420 ~ 36710743 (-)

Expression


Co-expression Network