G209623 (gria2,gria2b)


Basic Information

Item Value
gene id G209623
gene name gria2,gria2b
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 34124362 ~ 34127776 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU284480
CTGAACTGCAAAGAATTTTCACACcatactttaaaaaacatctCTTACCCTAAAGAACTCTTTGGTTGAGCCGGAGTCTAGAGTTCCATAAGCGATCTCGGTTTGTTTGGCCAGGTCCTCAGCGCTCTCGATAGGGGACACCATCCGCTCCACTGTGAGGAAAGCAGCCAGGTTGGCCGTGTAGGATGAGATTATGATCAGAGTGAAGAACCACCACACTCCTCCCACTATACGACCAGAGAGAACCTGGGTGAGATATCACAGCCCTGTCTCATGAAGGCTCCTAGGGAAAACCACAGGCTGTTGAAGATCCCAAACTCGTTTGTCGACTCGTTGGTCTGGATCTGTCCGTCCTCGTATTCCTCCGTGTGCCACTCGTACGGGCTAAAGCGGCTGACCAGGAACAGCACCACGCTGACGCCGATGTAGGCGAACACAATGCACATCCAGATCTCGTAAGCCAGCGGGTCCAGGAAGGAGAACACACCGGGCTTGGACTTCTGCGGCTTCTTTATCATTATGGAAATTCCCAGACTCATAAAGGGCTTCGAGAAGTCAATCACTTCCTCTCTGACTAAGGTGATGGTCAACGGAGCCACAGCTATATCAGCTTtCCCATAAACCAGCTCTCCAACCATTCCGTTCCAGATTTTAGTCTCAGCGTCTCGAGCTCCGTACTTCCCATCCCCCACAATCTTCAGCCGGTATTTGAAACCGCAGTGTTTGGCTATTTCGGCCGCCAGATCCACGCAGTATCCCTCGTATCTCTCATTATCCATAAACAGATCAGCGTTCTTCTTCAGCATCACATACGGTGCTTCCTGAAACAGACTGCACACTTCAGAG

Function

symbol description
gria2b Predicted to enable AMPA glutamate receptor activity. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in dendritic spine and plasma membrane. Is expressed in central nervous system; retinal neural layer; and sensory neurons. Orthologous to human GRIA2 (glutamate ionotropic receptor AMPA type subunit 2).
gria2 Enables ionotropic glutamate receptor activity. Involved in ionotropic glutamate receptor signaling pathway. Predicted to be located in several cellular components, including dendritic shaft; perisynaptic space; and synaptic vesicle membrane. Predicted to be integral component of plasma membrane. Predicted to be part of AMPA glutamate receptor complex; asymmetric synapse; and neuronal cell body. Predicted to be active in several cellular components, including Schaffer collateral - CA1 synapse; dendritic spine; and glutamatergic synapse. Predicted to be integral component of postsynaptic density membrane and integral component of presynaptic membrane.

NR:

description
glutamate receptor 2 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU284480 True 846 lncRNA 0.50 3 34124362 34127776

Neighbor

gene id symbol gene type direction distance location
pdgfc pdgfc coding downstream 122751 33909109 ~ 34001611 (-)
LOC111195843 NA coding downstream 269956 33853069 ~ 33854406 (-)
mrpl18 mrpl18 coding downstream 279411 33840987 ~ 33844951 (-)
grhpr grhpr,grhpra,LOC107550900,LOC107756505,LOC107730677,LOC105908753,LOC107680659 coding downstream 312040 33800102 ~ 33812322 (-)
LOC111195776 NA coding downstream 1497786 32614920 ~ 32626576 (-)
fam198b fam198b coding upstream 83789 34211565 ~ 34220540 (-)
tmem144 NA coding upstream 94103 34221879 ~ 34229881 (-)
LOC103036564 LOC103036564,LOC108425002 coding upstream 531714 34659490 ~ 34674207 (-)
gpm6a gpm6aa,dmb,LOC107602593,LOC108425001,LOC107569837,LOC107669084,LOC107662965,LOC105906175 coding upstream 548350 34676126 ~ 34708056 (-)
spata4 spata4 coding upstream 599386 34727162 ~ 34731836 (-)
LOC111195844 NA non-coding downstream 50768 34071114 ~ 34073594 (-)
G209575 NA non-coding downstream 285536 33835298 ~ 33838826 (-)
G209576 NA non-coding downstream 289686 33831220 ~ 33834676 (-)
G209571 NA non-coding downstream 325157 33797302 ~ 33799205 (-)
G209579 NA non-coding downstream 342355 33781743 ~ 33782007 (-)
G209625 NA non-coding upstream 8436 34136212 ~ 34151668 (-)
G209628 NA non-coding upstream 40398 34168174 ~ 34168411 (-)
LOC111195783 NA non-coding upstream 42980 34170756 ~ 34188629 (-)
G209682 NA non-coding upstream 258369 34386145 ~ 34386635 (-)
G209798 pitx2,LOC100136798,LOC107699310 non-coding upstream 435663 34563439 ~ 34566518 (-)
G209529 LOC103042373,LOC108425009,LOC108268400,LOC107730658,LOC107756507,LOC107667842,LOC107550901 other downstream 519373 33602099 ~ 33604989 (-)
G209458 NA other downstream 1168277 32955615 ~ 32956085 (-)
gar1 gar1,LOC106513240,LOC107756508,LOC107680945,LOC107586061 other downstream 1484433 32629294 ~ 32639929 (-)
G209303 NA other downstream 2606470 31517433 ~ 31517892 (-)
G209256 NA other downstream 2849960 31273868 ~ 31274402 (-)
G209640 NA other upstream 42991 34170767 ~ 34212849 (-)
G209660 NA other upstream 107142 34234918 ~ 34274593 (-)
egf NA other upstream 492685 34620461 ~ 34656484 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other upstream 581995 34709771 ~ 34759091 (-)
G210059 NA other upstream 2582644 36710420 ~ 36710743 (-)

Expression


Co-expression Network