CI01000009_14476688_14573629 (HDAC4)


Basic Information

Item Value
gene id CI01000009_14476688_14573629
gene name HDAC4
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 14475724 ~ 14573629 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_14476688_14573629.mRNA
TTGATGTGAGTGCGGCGCTGCCACTGCAAGTGCCGCCTTCTGCCATCCCTATGGACCTGCGTGTAGATCACCAGTTCGCCCTGGCGCCAACGGACCCGGCCCAGCGTGAGCAGCAGCTGCAGCAGGAGCTACTGGCCCTCAAGCAGAAACAGCAGATACAGAGGCAGCTCCTGATCGCAGAGTTTCAGCGGCAGCACGAGCAGCTCTCACGCCAGCATGAAGCGCAGCTGCAGGAGCATGTCAAGCATCAGCAGGACCTCCTGGCCCTGAAACATCAGCAGGAGCTCCTGGAACACCAGCGGAAGTTGGAGCGCCATCGTCAGGAACAGGAACTGGAGAAACAGCAGCGGGAACAGAAGCTCCAGTTACTCAAAAACAAAGAACGCGGCCAAGAGAGTGCTGTGGCGAGCACTGAGGTGAAGATGAGGTTGCAGGAGTTTGTCCTCAACAAGAAGAAAGCGTTGGCCCAGAGGAGCCTCAACCACTGCCTGCCCAGTGACCCGCGCTACTGGTATGGGAAAACCCAGCACAGCTCCCTGGACCAGAGCTCACCACCTCAGACAGGGATTTCCACTTACAACCACCCGGTGCTGGGAATGTACGACCCCAAAGATGACTTCCCACTCCGCAAGACGGGAGAGCACTCAAGGGCAATTCCTATGCAGACTGGTTTAGGTAGCGGTCACCGTCACCCTTCAAGAGTTGAGTTTGAAGCAGACGTGTGCGAGTGTGTAGCATCAGCAAATATCATGGGCTACTGCAGCAGACGTGTCAGAGTTCTGGAACAGCGCTGGAACAGACACACTCGCACACGGTTCTGCCATCTCAACAGTTTTTACAAGAGGCAGGCCTGCATTGTTCCTAATGAACTTTGCGTGCTCTCGTTTTTGGGCCATGTACGTTTTGACACAAGGTCACAAACGAAGCAAGGATCAAGCGTCAGAGCACAATTAGGGCAAGAGAGGGATCGAGAGGTCTTTGTTGGAGTATCATCTGAACCCAACCTGAAGCTACGATCCAGGCTGAAGCAGAAAGTTACGGAGCGCAGGAGTAGCCCGCTGCTTCGGAGGAAGGATGGGCCGGTCACCACTGCGAAGAAACGTTCTCTGGACATGGCAGAATCGGCATGTAGCAGTGCTCCTGGTTCTGGTCCAAGTTCACCCAACAACAGTTCAAACAACATTACCAATGAGAACGGCATCGCTGGATCAATCTCCAACAGTTCAATGGAGCCATCTTTGGCACACAGACTCGCCGGCAGAGAGGGTCCTGTTAGCCAGCTGTCTCTGTACACATCGCCCTCCCTTCCCAACATCACCCTGGGCCTGCCAGCCACCGGCCCTTCCAGCGTGAGTCCATCTTTCTTTTTCTCCATGGCATCTGGCCAGCAGGATGGTGACAGAATGGCAGTGCCAGGCTTACAGCCAGGAATACCCATAACCACTCCATTCATGCCAGGAACCCACCTGCCTTCTTACCTGGCTGCCTCCAGCTTAGAGCGGGATGGCGGCTCGGCACACAACACTCTCCTCCAGCATATGGTGCTTCTGGAGCAGTCAGCCGCACAGAACTCCCTGGTCGCAGGCCTGGGTGGCGTGCCCCTGCAGTCCCATCCCATCCATAAGCTCCGGCAGCATCGGCCCCTCGGACGCACGCAGTCGGCCCCCCTGCCCCAGAATGCCCAGGCGCTGCAGCAGCTGGTGGTTCAACAGCAACACCAGCAGTTCCTGGAAAAACACAAGCAACAGTTCCAACAGCAGCAGCTTCACATCAGCAAGATGATGGCTAAGCCGAACGAGCCAGGCCGACAGCACGAGAGCCACCCGGAGGAGACGGAAGAGGAGCTGAGGGAGCACCAGGGGCTGGGCGACTCCTTGGAGGGTCTTCCCCACGGGGTCACCATCAAACAGGAACCTCCGGATGAACAGGATGAAGAGTTCCAGCAGAGAGAGAGACAAGCTGAGGAAGAGCTGCTCTTCAGACAGCAAGCTCTCCTGTTGGAGCAACAGAGGATCCATCAGCTGAGGAACTATCAGGCGTCTATGGAGGCGGCCGGACTGTCTGTGACCTTCCCAGGCCATCGGCCCCTGTCCAGAGCACAATCGTCCCCAGCTTCAGCGACCTTTCCCATTGTGGTACAGGAACCACCATCCAAACCGCGCTTTACCACTGGTCTGGTGTACGACACTCTGATGCAGAAACACCAGTGCATGTGTGGAAACAGTAACATCCACCCCGAGCACGCCGGACGCATCCAGAGCATCTGGTCACGACTGCAGGAGACAGGACTGCGCGGACAGTGTGAGTGTATTCGAGGCAGGAAAGCCACTCTGGAGGAGCTACAGACGGTCCACTCTGAGGCTCATGTGCTGCTTTATGGAACCAACCCCCTCAGACAGAAACTGGACAGCTCAGTGACACCCATGTTCGTGAGACTGCCGTGCGGAGGAATCGGGGTTGACAGTGACACTATCTGGAATGAAGTTCATTCGTCCAGTGCTGCTCGTCTGGCTGTGGGATCTGTAGTGGATCTGGTGTTTAAGGTGGCTTCAGGAGAGTTGAGGAACGGCTTTGCTGTGGTTCGACCTCCAGGACACCACGCTGAGGAGAGCACTCCCATGGGATTTTGCTATTTCAACTCTGTCGCCATTGCAGCCAAACTCCTACAGCAGAGACTCAACGTCAGTAAGATTCTCATTGTAGACTGGGATGTTCATCATGGCAACGGGACTCAACAGGCCTTCTACAGTGATCCTAATGTCCTGTATGTGTCTCTCCATCGCTACGATGATGGGAACTTCTTCCCTGGCAGTGGAGCCCCTGATGAGGTGGGCATCGGTCCAGGCGTGGGCTTTAACGTGAACATGGCCTTCACCGGAGGTCTGGAGCCGCCCATGGGGGACGCAGAGTATCTGGCAGCATTCAGCCGCTTTTCTGTGACGCAAACTCTGTTCGGCTCTCAAAGCCTTCTGTCATCCTCTCTGAAGCCTTTAGACCTCCGGACGGTGGTGATGCCTATTGCGAATGAGTTCGCTCCAGACGTGGTGCTGGTTTCTTCAGGATTCGACGCTGTGGAGGGGCACCCGCCACCCCTGGGAGGATACAAACTCACAGCCAAATGTTTTGGCTACCTGACCAAGCAGCTGATGGGACTGGCCGGCGGCCGGCTGGTGCTCGCGTTGGAGGGGGGTCACGACCTCACCGCCATTTGCGATGCCTCTGAAGCATGTGTTTCTGCTTTACTTGGAAACGAGCTTTTGTCTAGGGTGTCACAGACTAGATGTTTGTCAGGGTGTGTATTTTGCAGCACTCCCTTTGTGCTGGCCAGCCACCAAGATTCAGCTGACACAGTCATAGTCCAGTCTGAAGGAAAACCGCATACTGGCAGTCTTAATGCAATAATCATAATCGGTTTACCTGCACCAGCATTCGCCTCTGAATCGGGTCAGTGGCAGACTGTGAGTCTACAGGCCCGCCTGGCGCTGCCTTCATCTCCAGTTTGCCCCATGGGAAGCTTTCAGACGCTACCAGCGGCCCATATGAAAGCAGTTAGCTTCACACCTCTCACAGACGGGGTCACTGACAGCCAGAGAGACAGAGGCAGACTTAAATTGGATCCACTTCCTGAAGACGTGCTACAACAGAGGCCGAACCCCAATGCCATTCAATCCATGGAGAAAGTTCTGGAAATCCAGAGTAAATACTGGCGCTCTCTGCAGCGATCCGCCTCGACTCTGGGCTACTCTCTGCTGGAGGCTCAGAGATGTGAAACTGAAGAGGCCGAGACGGTGACCGCCATGGCCTCCCTGTCTGTGGCCAACAAGCACATGGGGAAGAGGTGCAGTTATCTTTGACTTTGTGTGTGTGTTTGACATATGGCACATTCCACAAATACGGTTTAGGTCCTATTACTTTTTTAAAAAATACAGTAAAGGTACAAATAACACGTTTTACCTATAATTACCAATATTTATTTTATTATTTATAAGATATTTTTTACTTTACAAAAAATATATTTCATTTGACTTTCAACATTTTATGGTTAAGTACCTCCTTTCATTGAATTTGCTTAAAAATAAGTTTTAGCCTGTACTTTTTACCTTATTCCTGGAATGCGTCATATGTTTACTCGTAGCAGGCCTCCTGAGTGTGTCTGTTTATGTGACCTCATGTGTATTTATGATTGTGTGAGGGGTCTAGAGGTACAGGACAAGTGTGTGCATGAGCCGTGATAGGCAGGCGGGACTCTGTGAATGTGCGCGGCCGGTGCGGGGCAGACGTCCAGCAGTGTCAGGCTTCTGAGAGACAAACTCTGCCAGAGTCCTAATTAAAAACACTCAGGCAACATTGAGCACAGATGCTTGAGGTTTCTGGACCTTCCTTACACACTCAAACTCTTACACACATGTGTATATATACATGTGCCCAGCACAGGTTCAAACTCACATTATTTCCTGTTCTTCACCTACTTATTGACACCTATTTTAACTTTATTTTCCTATTTTATTTTTCTGTTTTCTGGCTTGGTGTCTGTGGCAGCCTCCTTTGGCACACTTGATTATGGAAGTTTCAAAACTCTTTGTGCCAATTTTGGAGTCAGTCTTTCAAACACTCTACCGCCACCAGACAACAGTTCAAAGTTGTCAGTTTCGTCAACGTTTTAGCTTATAACTTTTGAAACAAAATTCTTTTTTCCTCTCTTGATGCTTTGGAAGTTCCATGAATCTGGTTGTTTCAATTTCCTCCTGATTTCCTCGAAAATTCTCAAATGGAATATTCAAATTTTGTAAAACTCCGCCATGCATCATTTTAAATAAA
>TU67860
AAAATATTTACAAAAATGTGAGGGGTGTACTCACTTCTGTGAGATACTGTATATGAAAAAATAGACAGCGGTCTGGCTGACAGTCGACTGTAGTTCTCTCGGTGTGTTCACGGGCAGTTTTTTTGCCCTTGATGCAGGCGACGCAAAGTGACAACACATTTGGCTTTTATCAGTGCTAGTTCTTTGGCATCGGTTTGGTGTGTCCCTACCCTAAGACTTCTGCATAGCAGTTCTGCATGATAACTAGCCAGACTGGGCAAGTGAGGGTTCCATTTGCTGAGCTGAACCTCTGTCTCACTGGCCCTGGGCCCTGTTTTGTCAAGCCTGTCCTCTGTCCTCCCACCCAGCTTTTGTCTAGGGTGTCACAGACTAGATGTTTGTCAGGGTGTGTATTTTGCAGCACTCCCTTTGTGCTGGCCAGCCACCAAGATTCAGCTGACACAGTCATAGTCCAGTCTGAAGGTGGGAGTGAAAGAATAGCGAACGGTTCACTGTCCGCACACGGAGAAACAAGACAAATGAAGCTTTAGGGCATCATTTATCCACTTGTCTCTGTGTCAGAGGAAGAATAATTTCTTTTATGTTCCCATCTCTCATCTTCACTGCTATTCTTTCTCTTCATCTTCTTTATTCAGGGCCTTTCCTTTCTCTTTCTAAATCAAATCCATTCTCATTTTGGCTCTGCTTTGCTGTCAAAACAGCAGCCTAAATGAACCTCATAAGTGATTTGGAAAACTCTACATAGACAGCAATTTATTACATCCATCCTATTGATTTCAATACTATTTGACATTGGCATGTTACTAAGCTAAAGATGCAAAACTCTAACAAGCAAAAACTACATAGCACAACCAAATATTGGACCTGTAATGCCTTAAAATGTTGCCTGTGTAGGCAGCTCACTATCTCCATTCTTTCTTGGAGATTTTGTTCTTTGTCTCTTCCAGAGCTGAAGAGATTGTTAATTTGCTCACCTTGGGTTTCTTTACCTTGGGATTCTTAATTAGCTCACCTTGGGTTTCTGAGTATGCAAGAGTGGCATTGACATGTATATGTAGGTGGTAATGTGTTAATATTTAGGGTTTGTAAGTCCTAAAATCAAATACATTGTTTTATCACAAATCAAATCAGAGCAGAAACGAAAGATGATGCTCTGTATGTTTTTCTGTCATCTCTGTATGTAAATTACGCAAGCTTATTTTGTCCATTTGATTGAAAGATCTGGCAAAAAAACCCATACATTTACCCGTCCATAGACCCTCCTCTCGAAGCAATCAGGACAGAAGTGGTTGAAAGTGGACAAAAGAGACGGATTAAAACACCAGGTGTAAACGGGTATGTGTCTCCCTCGTCCACTTAACGCATCTTAGTACCAGGTGGAAACAGGACCTTTGACAGAATTGCACACAAAAACAGTTTTAAGTGAATTGACATGCCTTCGGACTACAGAAAATCTGTGTATTTTGAGAGAGCGACGCTGTGGCACATCCTTATAGAGTTTACTTCTGTTGGTTAAGGAGAACCTGTTGAAATTATCCATGCAGACCCATTGAGCCTCTAAAACATGTCCAAAAGCGTTCCCAGGCTATGTGGATCCCAAAATTTACACTTGTGCTGAGTTTATACGGCTTCCCAGAGGCTAGATTAGCTGAGCGCTGGGAGTTAGTGTTCAGAGCAGGACTGAATCATTTTGCCACTCTTAGGGTCAGATGAGAGGACGGGCCTCATTCCTGGTGTTATTGAAGCTCTAGAGTCAAGCCTATAAATACATTCCTGGAACAGTAAAAGTGAGCTGTCTCCACTCCATTTCTGGGGATGAGAATAAAATAACCAGGACAATTAGACCACGCGAAACAGGTTGTGTGCTGCACCAGGAATTAGATTTATGTTGATTAGTTCTGGCACTATGTTTGGTATACTACAGTAATTTCTTGTTGAAAACAGTTGTGCTGCTTAATATTTTTATGGAAACTGAAAATGATTCTTTGATGAATATAAAGTTTAAAGAAACAGCATTTATTTGAACTAGATTTTTATTTGTAACAATATAAAAGTCTGTACTGTCACTTTTGATCAATTTAATGTCCTCGCGGAATAAAAGTTTTAATTTATTTTTAAAAAAACATACTGACACCAAACTTTTGAATAGTAGTTTTTATTTTGCTAGATTTTTTAAATTTAATTTTATATATATTGAAATATTTTTTTGATTACAGGTAACATTTTCTTTTCATGGACGGACGGATGGATGGATGAGTGGGTGGTGGATGGACGGATGGATGAGTGGATGATGGATGGATGGATGAGTGGATGATGGATTGATGGATGGATGGATGGATGGATGGATAAGTTGATTGATGGACGGACGGACGGACGGATGGATGATGGGTGGGCGGATGGATGGACGGGTGGATGGATAGATGGATGATGGATGGGCGAATGGATGGATGGATGGATGGATGGATGGACGGATGGATGGCCCGTTCATGTACATGGGAAAGGAATGTTGTTTTTTTTCTTTTACCCACAAGGCACTGTGTGTCTCCACAGTAACAGGCACATCAGAAAATATATGCACTAACTGATCTGGACCTGTTTGCTTTAGAGGAAAACCGCATACTGGCAGTCTTAATGCAATAATCATAATCGGTTTACCTGCACCAGCATTCGCCTCTGAATCGGGTCAGTGGCAGACTGTGAGTCTACAGGCCCGCCTGGCGCTGCCTTCATCTCCAGTTTGCCCCATGGGAAGGTTTGTTGTCATAGCAGGAAAAGGATAGAGGAGACGAAGGCATTGAGCAAGCAAAACTGCTCAGTAAGGGCCTGTTTCAGCTGCCTATCGAGTGCACTCCCTGGAGGGATGTTATGAGGGGGCTCAGAGTATCTCACGCTCACTCTCTTCCCTTTCAGCTTTCAGACGCTACCAGCGGCCCATATGAAAGCAGTTAGCTTCACACCTCTCACAGACGGGGTCACTGACAGCCAGAGAGACAGAGGCAGACTTAAAGTAATCAAAGGAAATTAGGAAGCACAAAGTATAGAGGAAGCTTATGTCATAGAGCTCAAGAGTGGAAGGACTGACTATTCCATGAGCATTGGACACTCACAACAACTTACCACATTACCACATTAGATGCTTCAGGCCTCTCTTCCAGTGCATATTGTTTTAATATGCAAAGAGTTCACTGCCTTGTCTCTGAAAATTGGAGGCCTTGTTTAGATACACGTAACATGCATGTATTTCATGGCATCCATTCAGGGAGTCTTCAAAAGGGGCAGTTCAACCACACGGTCATTTGATGACCCATGCAAGACGTCACAAATGCCCCGAGAAGAGAAGCTCAGGCCAGATAATAGATATTAAGAAACAAGAGTACAGGCTGTAATCAGTATCACAGGAAGCAGGTGTTTTATCATTGCATTCAAGCCCACATTGTAACAGAGGTGAAGTTTAGGGCAGTGAGTAGATGATGTTGATAGAGCCTGAGAGCTTTCGAGAGCGTGTTTGAGTGTGTTTGAACTAGAGACTCATGGGATAACAGGTGCTCCAGCTACCCGAACCTCTACTCCGCCTGGTTTGCTTATTCGGTCGTCTATAACTTGAAAGGTAAATCAAGCTCAATAGGGTGCTTTCACTCAAAAGTAAACCAATTTATTTATTTTAGGAATCAACAAGACAATTTATTTGACATATTTTTATGTGTTCTGTAGTTTAACACTTAGGGGTCGGGAAACACGCCAGCGCATTCTGTGCAGCAAAATCGACTTAAAATACTGTCATTTTTTGTCATACAGACAAAAGTAATAAATCAGTTGAAACTACAGAATGTCTACTTTTAAGAGAAAATGATTACAGTAAAACTGAACACTACATTATGTCATGAAAAATAAAAGGCAGTTGTTTGCAAATGAAGTTATAATAGATTAATCATGTTCATGATTAGTGAGACATGAACATCAAAAGGAATCATTGAGAATTATTTTTAATCTACTGACATAATTGGCTACATTATCCATTCCCAATTTACAGTAGATTATTCGTATAGTATTATGTAAATAATATAGAGATATGTTATTAATATTATAAAAACGTGTGTGTG

Function

symbol description
hdac4 Predicted to enable NAD-dependent histone deacetylase activity (H3-K14 specific) and metal ion binding activity. Acts upstream of or within animal organ development; perichondral ossification; and regulation of neural crest formation. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex. Is expressed in several structures, including cranial neural crest cell; cranium; nervous system; optic vesicle; and trigeminal placode. Human ortholog(s) of this gene implicated in ataxia telangiectasia; chromosome 2q37 deletion syndrome; eating disorder; and retinal degeneration. Orthologous to human HDAC4 (histone deacetylase 4).

GO:

id name namespace
GO:0000118 histone deacetylase complex cellular_component

KEGG:

id description
K11406 HDAC4_5; histone deacetylase 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_14476688_14573629.mRNA False 4818 mRNA 0.52 30 14475724 14573629
TU67860 True 4100 lncRNA 0.41 2 14482822 14487015

Neighbor

gene id symbol gene type direction distance location
CI01000009_14342067_14344332 NA coding downstream 130790 14341987 ~ 14344934 (-)
CI01000009_14248805_14255014 NA coding downstream 219949 14247643 ~ 14255775 (-)
CI01000009_14201347_14205288 NA coding downstream 269837 14201115 ~ 14205887 (-)
CI01000009_14052206_14053489 NA coding downstream 421771 14051969 ~ 14053953 (-)
CI01000009_14012800_14024940 ITGB2 coding downstream 450493 14011950 ~ 14025231 (-)
CI01000009_14626182_14652953 NA coding upstream 52202 14625831 ~ 14653259 (-)
CI01000009_14763341_14773678 NA coding upstream 189583 14763212 ~ 14773681 (-)
CI01000009_14776978_14779978 CX43.4 coding upstream 203230 14776859 ~ 14781953 (-)
CI01000009_14905408_14907785 NA coding upstream 330860 14904489 ~ 14908077 (-)
CI01000009_14961220_14973307 NA coding upstream 387351 14960980 ~ 14973405 (-)
G59602 NA non-coding downstream 260871 14164892 ~ 14214853 (-)
G59636 NA non-coding downstream 274724 14199911 ~ 14201000 (-)
G59626 NA non-coding downstream 286561 14188385 ~ 14189163 (-)
G59610 NA non-coding downstream 299280 14176003 ~ 14176444 (-)
G59552 NA non-coding downstream 399891 14075624 ~ 14075833 (-)
G59590 NA non-coding upstream 40469 14614098 ~ 14711193 (-)
G59583 NA non-coding upstream 109240 14682869 ~ 14684152 (-)
G59754 NA non-coding upstream 142489 14716118 ~ 14716332 (-)
G59768 NA non-coding upstream 162388 14736017 ~ 14736281 (-)
G59794 NA non-coding upstream 240450 14814079 ~ 14814284 (-)
G59490 NA other downstream 437851 14033564 ~ 14037873 (-)
CI01000009_13975122_13976026 NA other downstream 497110 13975099 ~ 13978614 (-)
G59097 NA other downstream 2186206 12288217 ~ 12289518 (-)
CI01000009_08858198_08860555 NA other downstream 5615161 8856310 ~ 8860563 (-)
G55814 NA other downstream 6047712 8425821 ~ 8428012 (-)
G59811 NA other upstream 288768 14862397 ~ 14887464 (-)
G59941 NA other upstream 558475 15132104 ~ 15132503 (-)
CI01000009_15318811_15390382 TNS1 other upstream 802631 15318811 ~ 15390382 (-)
CI01000009_15654061_15662554 ARPC2 other upstream 1073146 15653760 ~ 15663026 (-)

Expression


Co-expression Network