G209872


Basic Information

Item Value
gene id G209872
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 35139450 ~ 35140107 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU284811
ttctttacatatatagtaaaacattgtttgatcaggcatgtgactaacacagactctattgtgacaaattaacccacacgatacataaggcgtttactaacacatagggtcgaacagtgcggcctttctctctgtgcgtgcaaagtccttcacctaccaaagcgggaggacgcgcgcacatagggagggcggcactgtctaattactggaacaatatcacactgtctgactggacccagtcaattcttaaaacaataccacactgtccggctggacacaatcaaggccaaacactagtggtccggtcagacctgtgaaacttgagCACTAACACATGAAATTacgcatgctaacatgagatgattttagcaacgcctcatcagcaggtttcacgtcatttggggtataaacatggagtcagatcagaggggggtcagaacttatactgggacggctgttagacggtctttcatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU284811 True 474 lncRNA 0.46 2 35139450 35140107

Neighbor

gene id symbol gene type direction distance location
aga aga coding downstream 353783 34774062 ~ 34785667 (-)
spata4 spata4 coding downstream 407614 34727162 ~ 34731836 (-)
gpm6a gpm6aa,dmb,LOC107602593,LOC108425001,LOC107569837,LOC107669084,LOC107662965,LOC105906175 coding downstream 431394 34676126 ~ 34708056 (-)
LOC103036564 LOC103036564,LOC108425002 coding downstream 465243 34659490 ~ 34674207 (-)
tmem144 NA coding downstream 909569 34221879 ~ 34229881 (-)
ctso NA coding upstream 7524 35147631 ~ 35167225 (-)
rnf130 rnf130,LOC103033921,LOC107723823 coding upstream 28433 35168540 ~ 35263408 (-)
LOC111195785 NA coding upstream 1549492 36689599 ~ 36691324 (-)
LOC107197706 NA coding upstream 1649922 36790029 ~ 36792803 (-)
LOC103044642 nt5dc3,LOC108420239,LOC107716671,LOC107679628,LOC107590839,LOC107665729 coding upstream 1653275 36793382 ~ 36804302 (-)
G209814 NA non-coding downstream 506234 34632785 ~ 34633216 (-)
G209793 NA non-coding downstream 526054 34610036 ~ 34613396 (-)
G209798 pitx2,LOC100136798,LOC107699310 non-coding downstream 572932 34563439 ~ 34566518 (-)
G209682 NA non-coding downstream 752815 34386145 ~ 34386635 (-)
LOC111195783 NA non-coding downstream 950821 34170756 ~ 34188629 (-)
G209894 NA non-coding upstream 168212 35308319 ~ 35308594 (-)
G209924 NA non-coding upstream 507295 35647402 ~ 35648209 (-)
G209929 NA non-coding upstream 562682 35702789 ~ 35703454 (-)
G209946 NA non-coding upstream 696096 35836203 ~ 35836645 (-)
G209951 NA non-coding upstream 733768 35873875 ~ 35878253 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 380359 34709771 ~ 34759091 (-)
egf NA other downstream 482966 34620461 ~ 34656484 (-)
G209660 NA other downstream 864857 34234918 ~ 34274593 (-)
G209640 NA other downstream 926601 34170767 ~ 34212849 (-)
G209529 LOC103042373,LOC108425009,LOC108268400,LOC107730658,LOC107756507,LOC107667842,LOC107550901 other downstream 1534461 33602099 ~ 33604989 (-)
G210059 NA other upstream 1570313 36710420 ~ 36710743 (-)
c24h12orf73 NA other upstream 1669200 36809307 ~ 36810496 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other upstream 2024927 37165034 ~ 37204385 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 4387526 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 4473608 39613715 ~ 39632176 (-)

Expression


Co-expression Network