G209951


Basic Information

Item Value
gene id G209951
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 35873875 ~ 35878253 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU284906
tTGAATTTATTGAAAGGATAGCCCCTTGAGATGTGACATCTCATTTTCAAGGGGGTcctataaatacatacacaaaacaaacaagcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacatttacacactaAACATACATTgcacatacatatacagctcacTTTCCACCAGAACTCAACTTATCAAATTACATCACTCGATACTTATAATATTCCAATACAGATaactgaaaacaattaagaaacaGAGTTGTTttaagatgaaaaaaatataacattgcatatataacaaatataacatcaatcggtacttttattttaataccaatacaaacaacagaaaaatatatataaataaataaattaaaaacataaacacgTAGTTTTAagataagaaaataaacatttcctgAAGCAGTGAAGTGAAGTTaattttttcaaagaaaaaggAAGATTATTCCAGTCAGAAGGAGCTTTGTAATTAAAAGACCTTCGCCCTACTTCTTTAGAGATTCTaggaacaaagaaaaaaggataTTGCATATGCCGAAGAGAATAAGAAGAtttaaatagaacaaaaaactgttttaagtAGGGTGGACAatccaaataaatacatttaaaaataaactgtacccAGTGATATTGTCTTCTAGATTTAGGTTGCAACCAATTAATTGATTCGAACATAAAACAGTGATGAGTTCTATATGGACATCTCAAAACAAACCTACACAAAGAGTTAAACACAACATTAAGAGGTCTTAAGTGAATTTCAGAGGTGTTCATATAAACTATATCAGCATAATCAATAATAGGTAAAATTAATTGAGAAACCAATCTTTTTCTAATATGAAACGTAAAACAATTAATTGCTCGATAAAGTGAACTCAAACaaccatatgtttttttaataatatagtcAACATGGGGTTTAAAGGAAAATTCAGAGTCAACCCAAAGACCAAGATATTTAAATGAATCAACTTTTTCAAGAGGTGATCCATcatcaaaataaatatgtagaTCCATGCTGAGAACCATGCTGCATACCAAACAACATGCAACAAGACTTCTTCTTATTCAATATAAGTTTATTATCATAGAGCCAATTTTGGACCAAATTAAACTCAGACTGTAATGAATTCTGAATTTGTAACAAATCCGAATTAGAAACATAAATAACAGTATCATCCGCATATAAGTGAACAGAACATTGTGAGCAAATCTGAGGCAAGtcattaataaaaatagaaaaaagcagGGGTCCCAAAATGGAACCTTGAGGAACACCTTTATCAACTATTAAATAGTCAGATTGACTTCCCTGAAAAACCACACACTGACGTCTATTATGAAGATAAGCACTAAACCATAGCAAAGCATTTTGACTTAGACCAATAGAATAAAGCTTATCCAAAAGAAGATAATGATCAACCATATCAGAGGCTTTAGATAGATCGATAAAGATTGCACCTGTATATTGACTTTTATCAAAAGATGAGAACACATCGTTAGAAAATTTTATGAGAGCTGTAATAGTGGAATAATTAGATCTAAAACCAGActgagataaagataaaatattaaacttattaaTATACTCAGATAATTGATTAAAGATGAGTTTCTCAAAAATTTTAGCTATAACACAAATAATAGAAATTGGCCGATAATTATTTAAGTCAGATTGATCTCCGCTTTTAAAAAGAGGAGTAACTCTAGCGCATTTCCAGATTTGAGGAACTGAACATGATAACAGGGACAAGTTAAATAAGTCGGCAAGGGGATACATTATTATGTGAGCAACTATTTTAATGAACTTGGTTTCCAATCCATCAGGACCAGCACAACAACCTACTTTCAGCTCAGATATCGCTTGAAATACATCAGTGGGCAAAATATTAGTAAACGAAAATGAACTATTTAGAGTAtcagattttaaaacatttgccAGACAATAAGATTTTGGATATTGGGGACCACAAATAGAAGAAAAGTACTGATTAAAAGCCTGAGCAATTTGTAAAGGATCAGAAATAGTTTTATCATTAAATCTTATCTCGTTTATGAAGcttttatcagttttatttaaaaccTGATTCAACTGTCTCCAAAACTGCTTAGGATGATTAAAATCCTGAGAAAGGCTCTCTTTATAATAGTTAGATTTGGCATTCCTTGTTTTTGTCTTACACAAATTCCTCAAACATCTATACGTTTCCCAATCAGCACAATCTTTAGACAAGTGATATTTGGCCCAGGCTTTATCCCTTTGTTTAAAAAGACTAATAAGATGTGAACTAATCCATGGTAGATGTCTACCTTTAACTCTGATTGTTTTCAAAGGAGCATGTTTATCAATCACGTTAACAACTTCAGAGTAAAAGAAATCCCATGCTTCATCTACAAAAGGAATTAACTGGAATCGATTCCaattaacattaattatatCTTGAATAAAATTATCAACATTCATATTCTTATTCTGTCTCAATCTAATATACCTAGGAGGAGAGCGTGgagttttaattttccataCACAGAATATGATCGAATGATCACTCAAACAATCTGACATAACACCAGATTTAATTATTCTTTCTGGGTTAGTCACCAGTATCCAGTcaattaaagaagaagactggTTGACCACCCTATGGGTTGATTAATTAACTGCGTCAGATTTACACTACCAAATAAATGTCTATCTTTAGAAGATGAACGGTCCAGCCAGTTTCTATTAAAGTCTCCCAAAATGATCATTTCACTGTGCCTCTCAAGAGAATTAATAGTTGACAAAATACACTTAGTAGAGTCAATTGGAGCATGAGGAGGTCTATAGATATTACCAATAATTAAGTGTTTCTTATCATGaaaattaatatgaataaacaaacattCAAAGTGCGCTGGCTCTACTTTAGGAGCAACACGCACAGAAATCAATCTTGAAGAAACATAAGTAGCAACTCCACCTCCTCTAGATGCCCTATCAGctctatataaaacaaaatgatctatttttatatcattatCAGAAATATTACTATGCAACCATGTTTCAGAAATAGTGACAATATCTGGTTTATAGAAGTTTATCCAGGCTCTAAGAAGATCAATTTTTGAAACAAGGCTcctaatatttaaatgaataaccTTCAATCCTTTAACTAATTCAATTGTACCTACttaaattgcaaaaaatataaagttgAGTTTGAAAGGAAGATGATGGAGGAAAGAAGAgcagcacacagacacacacacacagacacacgcaaacagacacacgcacacaaatacacacacacagacacacgcacacagacacacatgcctatgaagtaaaataataagaagaaaaaaaaagagtgagcaACAGCAGGTTTAGTctgcacataaataaaaaagaaaaaacaaagaaaaaagagaagggccttttcattcatattataaataaataaatagaaaaatcaacaaacatatgaataatatattaaacatttaaatgcacTTAAACAAAGCCAGGTAACAATGCAATGTCCATTCATAGGTGACAGACTTTTGTCCAGACAAACAAAATCAAAAGACAAGCAATTTGCCTAATGATTTACTCACTAGATCAGAGGAGATGACGGTAAAGTTTTGACAAAAAGGTCAGCTTCTTCAGGGCAACGGAATAGTTTTGGCTTTCCATCCACTGTGACTCTCAGTGTACAGGGTTACAGCAAAGAGTATTTAATATCAGCAGCACGGAGGATCTTCTTGACAGCATCAAACTCTCGACGTTTCTTGACCAAACCAGCACTGAAATCAGGGTAAATATGAATGCGGGTGCCGCTGTAGGTTAGCACCCCTTTTGCCCTTGCCAGACGTAGGATCTTTACTTTGTCCTGGAAATGCAAGAACTTAACCAAGATGGGTCTAGGAGCAGATTGAGCATTGGAGCCAAAAATAGGAGTGCGGTGAGCCCTTTCAATAACCGGCATAGTGGAAAAGTTTTCACATCCCAGAAGCAATGGAATCATCTTGTTCATGAACACAATCATATCTCTTCCTTCACTTTTCTCTGGAACACCAATAAAGCGAAGGTTGGATGACCGGTTTCTATTCTCTGCATCTTCCACTTTGTCTTTCAAGTAGGCATTTTCTTTTTCAAGAGTTTGTACACGTTTAGTCAAATCATCAACATTGTCTTCATTCGAACTCACCCTTTGTTCAAGCTCAGAAATTTGCTCACACAATGAATTCAAAGATCCTTGAATATTTTGAAGTCCTGTTTGAATGGTCTCAGTCTTTGAGTCAAAGTGAGCAGTCATTTCAGTTTTAAACTGCTTAATTGCATCCAATATTGTTTGGAGGGAAGCCTCAGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU284906 True 4379 lncRNA 0.33 1 35873875 35878253

Neighbor

gene id symbol gene type direction distance location
rnf130 rnf130,LOC103033921,LOC107723823 coding downstream 610467 35168540 ~ 35263408 (-)
ctso NA coding downstream 706650 35147631 ~ 35167225 (-)
aga aga coding downstream 1088208 34774062 ~ 34785667 (-)
spata4 spata4 coding downstream 1142039 34727162 ~ 34731836 (-)
gpm6a gpm6aa,dmb,LOC107602593,LOC108425001,LOC107569837,LOC107669084,LOC107662965,LOC105906175 coding downstream 1165819 34676126 ~ 34708056 (-)
LOC111195785 NA coding upstream 811346 36689599 ~ 36691324 (-)
LOC107197706 NA coding upstream 911776 36790029 ~ 36792803 (-)
LOC103044642 nt5dc3,LOC108420239,LOC107716671,LOC107679628,LOC107590839,LOC107665729 coding upstream 915129 36793382 ~ 36804302 (-)
LOC103023613 NA coding upstream 944030 36822283 ~ 36827999 (-)
LOC103023303 NA coding upstream 949638 36827891 ~ 36836649 (-)
G209946 NA non-coding downstream 37230 35836203 ~ 35836645 (-)
G209929 NA non-coding downstream 170421 35702789 ~ 35703454 (-)
G209924 NA non-coding downstream 225666 35647402 ~ 35648209 (-)
G209894 NA non-coding downstream 565281 35308319 ~ 35308594 (-)
LOC111195784 NA non-coding downstream 728295 35125163 ~ 35145580 (-)
G209993 NA non-coding upstream 254877 36133130 ~ 36168032 (-)
G209995 NA non-coding upstream 257607 36135860 ~ 36136239 (-)
LOC103047198 NA non-coding upstream 439398 36317651 ~ 36331749 (-)
G210004 LOC108438453 non-coding upstream 461060 36339313 ~ 36345823 (-)
G210012 NA non-coding upstream 625386 36503639 ~ 36503895 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 1114784 34709771 ~ 34759091 (-)
egf NA other downstream 1217391 34620461 ~ 34656484 (-)
G209660 NA other downstream 1599282 34234918 ~ 34274593 (-)
G209640 NA other downstream 1661026 34170767 ~ 34212849 (-)
G209529 LOC103042373,LOC108425009,LOC108268400,LOC107730658,LOC107756507,LOC107667842,LOC107550901 other downstream 2268886 33602099 ~ 33604989 (-)
G210059 NA other upstream 832167 36710420 ~ 36710743 (-)
c24h12orf73 NA other upstream 931054 36809307 ~ 36810496 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other upstream 1286781 37165034 ~ 37204385 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 3649380 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 3735462 39613715 ~ 39632176 (-)

Expression


Co-expression Network