G210076 (armc10,LOC107753539,LOC107716641,LOC107665740,LOC107679576)


Basic Information

Item Value
gene id G210076
gene name armc10,LOC107753539,LOC107716641,LOC107665740,LOC107679576
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 36769669 ~ 36770997 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU285088
cacggtttaatacaaataaattaaaacagataTATGCAACAAGCATTTCAAAATTTGATGTCAGTTATTTTTCATAAAGGCAAGCAACTTCTGTCTGAGAGCATAAACCTTCAATAGCAGTGGCAACAAGTGTACCGTCATGTTACACTAGACTGCAAAATGTCATTTCCTAGCGTGACAGAACAGTATAATCAATGAGGTGCAATGCTTACGACTGCAACACATACAAATTTTCACATTTGATCATGGCATTTGATTTATGAACAATTCTATTTGGGATCCAtttgcagaaaaacaaaaggaCCAAACGGACCCTCCATTATACATTTTGCTTTATAAAGACTCTGGTTATGCATTAAGAATTAAAATCAGCAGCTGAGATTTAAAGGCATGTCCCAAACACTTCTCACAACATGCAGACCTGTTACAGCACTGGAGAGCTGTCCAGTactttcactgtaaaaaaaaaaaaaacatgcattcaTCGTCCATTAATTCTTCAAAAGTTCACAAAAGCAAGGCAAACATTAGCAACCACACACTCTAGTCCTTTCTTTAGTCACTGAAGATAAGTAAAAGAAAGCACTTTGTGTAACACTGGGCTTCTGCAACAGGGAGACATTCATTCACCTGACTAGAAAAGGGTTTGGCAGTGAGAACATGAGCGTCagagaaggagaaggaaaaCCTTCAAGCAGGATTGGCTTTGCAGACACCACCCTCTGTAAGAAGCCTGCATGAGTTGAAGTTCCCGTCTAttttaatgcaataaaatattccAGATGTAACAAAACCCTTTCGCTAACCAATGCTAAAGCTACTTCCCTGCATCAGTGCAAGTTTACAGCACAAATCTGCCCAAACATCAAAATTTCACAAATAGACCTATTATTTGAtgtccagcttttttttttttttaaacaaaatacaagTCTCCATAATTTATACCtaacaaaactataaaacaaactGTGCAAAAGCACTGGTCAGGCAGGAGACTTCATAAGGTTTTGGCAGTTGAAGGCTAAGTGAAGCCGCGTTCAGAGGCTAGGTGAGAAGCCGTGCCACCTGAGCTTTAATCTCCTCATCTGGGTGGGTGAGAAGAAGAGGGAGCCTGCTGTGGAACTGTGAGGAGCTGTCCAGCAGCACACAATACAGAGAGTCTTGCTGCCTCCTGAGAGCTTCAGCCACCTGCGCAGATGGTCTCCAGGCCCGTAGGTTCCCCGCAAAAAACAGCAAGCGAAGAAGAACTTCTGTATTTGTACAGCCATCAAAGAGAAGTACCAGGGAGGCTGGAG

Function

symbol description
armc10 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head and otic vesicle. Orthologous to human ARMC10 (armadillo repeat containing 10).

NR:

description
PREDICTED: armadillo repeat-containing protein 10

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU285088 True 1298 lncRNA 0.41 2 36769669 36770997

Neighbor

gene id symbol gene type direction distance location
LOC111195785 NA coding downstream 78345 36689599 ~ 36691324 (-)
rnf130 rnf130,LOC103033921,LOC107723823 coding downstream 1506261 35168540 ~ 35263408 (-)
ctso NA coding downstream 1602444 35147631 ~ 35167225 (-)
aga aga coding downstream 1984002 34774062 ~ 34785667 (-)
spata4 spata4 coding downstream 2037833 34727162 ~ 34731836 (-)
LOC107197706 NA coding upstream 19032 36790029 ~ 36792803 (-)
LOC103044642 nt5dc3,LOC108420239,LOC107716671,LOC107679628,LOC107590839,LOC107665729 coding upstream 22385 36793382 ~ 36804302 (-)
LOC103023613 NA coding upstream 51286 36822283 ~ 36827999 (-)
LOC103023303 NA coding upstream 56894 36827891 ~ 36836649 (-)
LOC103039285 klhl4,LOC107710306,LOC107563598,LOC103356419 coding upstream 180884 36951881 ~ 37003635 (-)
G210074 LOC107712756 non-coding downstream 2118 36765414 ~ 36767551 (-)
G210065 NA non-coding downstream 35463 36733790 ~ 36734206 (-)
G210014 NA non-coding downstream 151861 36617584 ~ 36617808 (-)
G210012 NA non-coding downstream 265774 36503639 ~ 36503895 (-)
G210004 LOC108438453 non-coding downstream 423846 36339313 ~ 36345823 (-)
G210110 NA non-coding upstream 34134 36805131 ~ 36805452 (-)
G210107 tdg,LOC107574736,LOC107679604 non-coding upstream 44674 36815671 ~ 36822106 (-)
G210120 NA non-coding upstream 100582 36871579 ~ 36871944 (-)
G210169 NA non-coding upstream 336703 37107700 ~ 37108089 (-)
G210173 NA non-coding upstream 356697 37127694 ~ 37128205 (-)
G210059 NA other downstream 58926 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 2010578 34709771 ~ 34759091 (-)
egf NA other downstream 2113185 34620461 ~ 34656484 (-)
G209660 NA other downstream 2495076 34234918 ~ 34274593 (-)
G209640 NA other downstream 2556820 34170767 ~ 34212849 (-)
c24h12orf73 NA other upstream 38310 36809307 ~ 36810496 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other upstream 394037 37165034 ~ 37204385 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 2756636 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 2842718 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 2872547 39643544 ~ 39795943 (-)

Expression


Co-expression Network