G210107 (tdg,LOC107574736,LOC107679604)


Basic Information

Item Value
gene id G210107
gene name tdg,LOC107574736,LOC107679604
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 36815671 ~ 36822106 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU285132
gttACAATGAGATTGACAAAATAGCACCAATAGTGTTTCATAtaaacagtaaaagcacaggACTGCAATCATAAAATCCACAACGCATCAGGtgacataataatataatgagtGGCTGTCTTTTACATGTGCTGTATTCTTTCACAGTTTTACAAATACCAGCGCTACCAGTAATTTCAAACCTCTTAAAATGTACCTTTAAAAACGTACATTGACATAAATTGTGGAATCATTGCATGATTTCATATGTGCCACTTGCTCAAGCACCTTATATCTTTGTATGTGAAagactattaaaaaaagatgaacTACACTCGACCCAATCAAATTACACACTTTGACCTCTTTTGATAAAATCAAGTATCAGTCCCTGATATCACAAAGCATGAAAACAACTTCAGCAGTGCTGACCCTTATACACTACACAAAAGcattagataaaaataaaagcaaaaatagtTCCATAGAAATACTAAGTCCTAAAATGTCTACTTCAAATTCATtgcaaaaaaatctttattcgTCTCTTCTCAGACGAAGAGCGTTTCATGCTAACGGTCTTCAGCTGAAAGACTGAGGTACAGTTTCTTTATAAATGGAGCAGCAGCTGATTTATCCCTGTTCGTAGCTCCAGTAGTCGCCTCCGTGATTTTGACATCCATCCTGTGGAGTAATTTTGCACACAACAATAGCAGTTGTTTTATAATACCCATGACTGTAACAGGGCTTTATAATATATGAGCAAAGAGAAAAATTAGCACACTCCTTGAGGACTCCTGAACTGGATGAAGCTAGTGAGAGGCACTGTGTCCGAGCTGAAAGTGAAAACGGGAGCTCTGTCTATAAGGCTGCATAAAAAGGCCCTTACCAAGCCTCATACAGCCCCTGCAGGCGCTTGTGAAGAGCTTCCAATGTCCGGAATCTTGTCAGTGAAAGACTCGTTCATCCACTGTCCCCCTGGAACCTGACCCTCCTTGTTCTGATTTCTGGGTTCCTTCTCCGATGTTTCTGCCTGTCCAGAAGAGAACGGACAATGTCCATTGCTCTGTCCTTCCTCAACTCCAGGTTCTCCATACGCCCCTCCAAAGGCAGCTTCGTAGCCAGGATCATACTGCTCTTCCTTGATGGCCATCCTCTTGGCATCCTCTTTAGCCAGGCCAAGATCGAAGGAATAATTGACTTCCTCCACCTCTTGAGGTTTAGCAACACCCTTCAGTTGGTCTCGAAGTTCCCTGAGCTTGATGTAGAAGTGCACTTTATCCTGAGCTCGGGGGAACTGGGCACAGCGAGCACTGGACGAGGGCATCAGGTACAATGCCGTTTCAGAGTCTGGAATCTTGTGAGGCTGTAAGCCAAATTCCAGAGTTTTTGGCTTTTTCCCAAATATTTCTCTACAGAACATTTCATAAATACATTTTCCATTGAACACAGCTATGAGTGGCTTGAACTGCTTTATCTTCTCCACTAAAATTTTGCCACCTTCTCGAAGCTCTTTACTTGAGAGATCTTTGCTTCCGGGTGTTGCTCTGGCTACCATGTTTGTGAAGCCAATGCCGTATTTCTCAGGAAGAGTCTGGTCATGCATATGGTTCAGCAGCTGGTCAGTGAACCCAGACAGGAACAAGCACTTCCAAAAGTGATTTCCAGGTCCAGGGAACCATCTTCCAATATAGGCTGCCATTAATCCTGGATTGATTCCAatAATCACATAATCCAAGTTGGGCGTAAGGATGTCCGGCAGAGTCTTTTTCATGACCTCCTCTTCTGACATGCCCTTGAAGCGATCTATTTTCCTCTTTACTTTCTTGAAGGATTCATCAATCTTCTCTTGAGCACCTTCAATTGGCTGGCCATCTTTGTCTAGCTTGGCTTTCTTAGGCTTGGGGCCAGGTTTAGCCTTGGGTTTAGGCTCTGCTTTAGGTTTGGGCTCTTTGTTTGCAGGTCTGCCCCTCTTCCCTTTAGCAGGAGCTTTGGCTTGCTCTGGAACACCAGCCTCTAGCTGGGCAGGCATCTGCTGCTGCAGAGGCATCTGTGCCATGACCCCATCTTCTCTTGGTCCCTCCATGTACTGGCCAGCATTTCCATTAGCCATATGAGAATACTGAGCGTGAAGTGCCTGGAGATGTTGTTGCGCTGACTGTACCCAGTGCTGGACATAATCCGAGGGGGCATGGGGGGGCAAAGATCCATAACTCCTTTCCTCCATCTTTAGGGTACGTTGTAGTATAAACCGATACTGATATTAATCCGGTAAAACGTTTTATTTCAAGCTAAACAAATCCTGTTAAAGGCAACAAAGACCCGCAGCACACAGCAGAAGCGCAACTTGGCACTGGAACATACCAACATGAGATTGAGGGGTGCTGCCGGAGACCGGTTCACTTACGACTTATACAGCTAAACAATGGCTGATTCGGTCGCTGCTCAAACaaacagatatacagtattggTGCTTTCCACATACGTGAGCAGTTCTTAGTTATCACTTGTGTGAAGTATATTTTCTCTTTGCACATTTTACAAGTTCAAAACACCCCTTATTGTGGAGTCGGTCCTCTCCCCTGCCGTTTAAATGTTCTGAAGCCCTGTTTCTATTGGCCTCCACTCG

Function

symbol description
tdg Enables several functions, including G/U mismatch-specific uracil-DNA glycosylase activity; anion binding activity; and metal ion binding activity. Involved in base-excision repair, AP site formation; mismatch repair; and regulation of DNA N-glycosylase activity. Located in nucleoplasm and plasma membrane.

NR:

description
G/T mismatch-specific thymine DNA glycosylase isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU285132 True 2608 lncRNA 0.44 11 36815671 36822106

Neighbor

gene id symbol gene type direction distance location
LOC103044642 nt5dc3,LOC108420239,LOC107716671,LOC107679628,LOC107590839,LOC107665729 coding downstream 11369 36793382 ~ 36804302 (-)
LOC107197706 NA coding downstream 22868 36790029 ~ 36792803 (-)
LOC111195785 NA coding downstream 124347 36689599 ~ 36691324 (-)
rnf130 rnf130,LOC103033921,LOC107723823 coding downstream 1552263 35168540 ~ 35263408 (-)
ctso NA coding downstream 1648446 35147631 ~ 35167225 (-)
LOC103023613 NA coding upstream 177 36822283 ~ 36827999 (-)
LOC103023303 NA coding upstream 5785 36827891 ~ 36836649 (-)
LOC103039285 klhl4,LOC107710306,LOC107563598,LOC103356419 coding upstream 129775 36951881 ~ 37003635 (-)
LOC103034997 NA coding upstream 181802 37003908 ~ 37038731 (-)
eef1g eef1g coding upstream 250480 37072586 ~ 37082206 (-)
G210110 NA non-coding downstream 10219 36805131 ~ 36805452 (-)
G210076 armc10,LOC107753539,LOC107716641,LOC107665740,LOC107679576 non-coding downstream 44674 36769669 ~ 36770997 (-)
G210074 LOC107712756 non-coding downstream 48120 36765414 ~ 36767551 (-)
G210065 NA non-coding downstream 81465 36733790 ~ 36734206 (-)
G210014 NA non-coding downstream 197863 36617584 ~ 36617808 (-)
G210120 NA non-coding upstream 49473 36871579 ~ 36871944 (-)
G210169 NA non-coding upstream 285594 37107700 ~ 37108089 (-)
G210173 NA non-coding upstream 305588 37127694 ~ 37128205 (-)
G210197 NA non-coding upstream 406155 37228261 ~ 37228612 (-)
G210223 lman2 non-coding upstream 477008 37299114 ~ 37301802 (-)
c24h12orf73 NA other downstream 5175 36809307 ~ 36810496 (-)
G210059 NA other downstream 104928 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 2056580 34709771 ~ 34759091 (-)
egf NA other downstream 2159187 34620461 ~ 34656484 (-)
G209660 NA other downstream 2541078 34234918 ~ 34274593 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other upstream 342928 37165034 ~ 37204385 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 2705527 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 2791609 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 2821438 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 3111010 39933116 ~ 39940055 (-)

Expression


Co-expression Network