LOC103033395 (arap3,LOC107563596,LOC107717393,LOC106939943)


Basic Information

Item Value
gene id LOC103033395
gene name arap3,LOC107563596,LOC107717393,LOC106939943
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 37165034 ~ 37204385 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU285275
GTCAATGTCTATAAGAAGTTTGGTGCATTCTCACCATGTCGGCATGGGTTTCCTGTTTGCTTACAACATAGATGGTAGGTAAATTGGCTATGCTAAGTTGCCcctaagtgtgagtgtgtgtgtgtgtgtgtgtgtTTGTGTGTCTTTTAGTGATCTGTTTTAGTACATGTTTTTGggccaaactaaacaaaaataagtgCCATCTCACACTTCTCAtcttttgaaaatatatttccAGCTTGAATTACTGTTTCACATCCTTGGTTTTTATATTGGTTTTTAAGTATTACTTCTCCAaattcatttattgtttattttttaatataaacggTGCCATAAACCACAATAAGCCCAGTCTGCATGCAAAAACTGGGCATTAACACAGTATTGTTCTTGtacagcaaataaaataaaacaatctgTATTACATACATCTTTACCAGGAACATGGTCAGTTCTAGAACTTTCGCCTTATTTTTGCCTGTAcaatttgttgtatttattaatttatttatatattcgcCAACATTCAGACCAATGActctgtatatatgtttatatacagtcattcaTTCAGACACATTGTCGTATGCAAGCAGAATGGAGCTTTTTTCAGCTCGACTTTGATCAGTAGAGGGCAGTGTAGATTTAGCACATAAATGCTCGACAATCTTGTTTGTTCCACTTAACTCTTCTCTACAGACATCTACAGATCTTGTATAGTACCTTATGTATGCTCTGCTACTGTATAATATTAATGAATTTGACCTATTTtctgctgatgtttttttttatatatatgttgagTTATTGTTCGTGCCATCCCCTTTTTGTTCTCTTGCCTGGAATGCAAAtgcttttgttttactgttataTTCACTTTTTGCTCTGATAGCATATCAGTATGCTTGTTGGTTAGGCTAATGTTGTAATAATGTTGTATatggcagtatttgttcagtgTTCTAAAGCTTGTGGTAGGATTGAAATGTCATTGTACACTGTAAAGGTTAAGGATCTTCTAGTTATAACTGCAGAAAATTTTGGTTTTGCCAAATGTGTTACTGAAACTGGAAaagtatattgaaatatata
>XM_007246456.3
GATAAGATGTTAgcagttgttttgttgttgattAGCAGTTGTTAgggtagctaacgctagctagttaAAGAGTGCAGGGTAACGGTCGGCAGACTGTCACTCCTACACGCCCTCCCCTTTAAGAGCTCTCAGTGAGTTTTCAGAGTTGAGCAGCTCTCCGCTCCCACagctctctgtctcactcagTCTCTCATCTAAAGCTCAGTTTCTCTGCGCAAACACGGCCGTATATCAGTCTTTATCACACTGGTTTTACATTACGGATTTAGACGATCTTCACACCGCTCCAGCGCTGAAAATGTAACCGGTCAACAGAATAAGATGAGGGACTGGcatcctccacctcctcctcctcccttgGCCAGTGTTACTGCTGCTTTGCATGCAGGCTAATCCCATAGCCCATGTACACCATGGCAACTATTGATCCAGGCTCTGATGCAGAGGACCTGTTGGCTTCCATTCACCTTGAGAAGTATTTGGACGACTTCAGACAGGCAGGCTTTCTGCTGGCCCGGGACTTTTGTCATGTTGACAATACAGTTCTGAACAGACTCGGAGTGACGGCCACCGGCCACAGGAAGCGAATCCTCAAACTGGTCGAGTACATTCAGCTGATCTGCCAGTATCAAAGGAACGACTCCCTGTTGGACCGCTGTAACTCAGAGTCAGCCATTCACGAGGCGACTGCTGACGAGCTAGGGCCTCTTGCACCTCGAGGCAATGCGGACTCGTCCTTTGAAGCATCGCGAAACAGCTCTGTTCCAAATCTGTCTGCCCTTGTTAAGCGTTCACACTCAGAACGCAGCACTGCCGTTGTGAAGCCGATCCCAAAACCCAGAACTGTCTTCAACAAACAAAGGGTGCAGCAGCCGTCTCCACCCTCACGACAAGCACCACAGTTCCGCAGAAGCTCCTCTCAGGATTCTCCCCGTTCTTTAGTTCTGGAGGGTTCTTCTGTTGAGGAACCCAACCCTAAATCTGTAGGTCTAAGGGAGAACTTGAACTTGTGTAAAGACCACTTGAGTAGTATTTTGTCATCACCAGAGACTAGTGGGCCACTACCTCCAGTGCCCCCAAGGTACAACCGAGGGGTTCCCCCATCTATATTCAAAAGGATGTCTGACCAGGATCAGCTAACCACCCCACCACTTTCCTCCTCTCCCGATTCCCTTTCCAGTTATCAGTGTTCTCCATTTACCAGCACACCTGGCTCCCCTCCCAGCCCTCCATGCTCAGGCCTGGAAATGATCTCCAATGAAATCTACTGTGGCACTTTACCGGGCTCTTCCCCCACGCTTTGGAGCCGCACTGTACCTACTCCTCCACCACGCCAAGAGCTCAACACATCTACTGAAAGCAATAGCACTTTAAACCACATCTCGCCAGAACCATCTAAACGAACGTTTGCTCCTGCAGATGAAGAAGATGATCTCATCAGCCCATACTGTGAAACTGTTTTGCAAAGCAAGCGCCAATATCAGCATTCTGAGGTTGAAAGACCCAGAAGTGGGGAAAAAGTTGGAACTAAAGAAGATAAGACTAGAGAAGACCATGGTTCCAAGCGCCACACCCAGTCTTCCCCTGGTGACTCTCCAGGCTACTGCACAGTGGGAGATCCCTCACCTGCTTCACGCTCCTTCGCTTTGCCTCCTCACGCCCTGTTCCCCAGCGAACTGGACGAAGATCAGACCATCTCCCCCTACGCCAGCTACACCTCACTGTCCGAGCGCACAGCACCCATAATCAGTGGCTGGCTGGACAAGCTTTCCCCCCAAGGgaattaTGTGTTCCAGAAGCGCTATGTTAAATTTGATGGAAAAAACCTGATGTACTATGGAAGCGAAAAGGACACATACCCAAAAGGTGTGATCCCTCTAGCGGCAATACAGATGGCTCGTGTTGCTAAAGACAACAAGTTTGAAGTTGTGACCAGCCATAGGACGTTTGTCTTTCGCGCTGACAATGAAGTGCAGAGGAACAAATGGTGCAGTGTGCTGCAGGAGCGCGTGAAGGAGCAGATGGTGTTCGGCAGGCCTCGCTTCGGCCCGGGCAGCCACTGCCAGAAAAGCGGCTTCCTAGAGCTCAAAGGGACCAAGTCAAAGATCTACGCCGCCATTATAACAGAACAAATCTGGCTGTACAAGAATGAGCAGtgctttaacACCGGAATTGGAATCAGCGTGATTGAGGCCAGAGGTGCTACAATCCGAGATGGCAAGAGCAAAAGCTTTGACCTCATTACCCCTTACAAGACCTTCAGCTTCACGGCTGAGTCGGACCGGGATAAGCGTGAATGGATGGAGGCTCTGCAGGAGTCCATTGCAGAGACGCTCTCTGATTACGAAGTGGCTGAGAAAATCTGGTCAAACCGCTCCAACAAGATCTGTGCTGACTGCAAAGCCATCAATCCTGACTGGGCCTCTATTAATCTCTGTGTGGTCATCTGCAAGAACTGTGCAGGCCAGCACAGAAGCCTGGGCACAATGGTGTCCAAAGTGCAGAGTCTGAAACTGGACACCAGCGTTTGGAGCAACGAGATCGTTCAGCTCTTCATAATGCTGGGCAACGACAGAGCCAATGAATTCTGGGCTGCTCGGCTTCCGGTGGCTGAGGAACTGGACTGTGATGCTTCCCCAGAGCAGCGTAGAGAATTCATTGTCCAGAAATACAGAGAAGGACGCTACCGCCACCCTCACCCCAGCTTTAGCACACAGGAGGAGTTACTTAAGGCGCTGTGCACAGCGGTGACCGAACAGAACCTCCTGAAGACGGTCACTCAGATTTTCGCTGAGGCAGAAGCAGCTCGACTCGCCGACTCTAATGGACACGAGAAGCACCTGTCCCTACATTACCCCTACACCCAGGCCTCAGaTTCCAGTGTGTATGACGAGATCATGCAGCCGGTCCTGTATTCTGGCTACCTTTACAAGTCAAGCTCTATGAACAAAGGCACTTTATCCCGTCGGACCAGAGAAGATTTTCAGAAGTTCTGGTGCTCTGTGGAGAAGTCCCTTCAGTTTTATGAGTCTGACCGGTGCAATGAGCCCAACATGAAGATAGATGTTAAAGACATAATCTGTTTGGGAGTTAACAGGCCAGACTCATTAAACAACAACGGCTTTATTGACAGGTTTCGATACACTTTTGAACTTTACCTAACATCTGAAAAGCTTGTTCAGTTTGGCCTGGAGACCCCTGATGCACTGCAAAGCTGGGCAAAAGCTATTGGAAAGGCCACCACTCCTCTGAGCTGCCACTGCTTACTGGCCCGGGAGTTTGAACGGGTGGGTGTGCTACGCTATAAGGCTATGCTGGACCCGCAGCAGTGGAAAGAAGGTTTTTTTGTCCTGCAGAAGTCCAACCTCTTCATCTGCCCCGGAAACGATGGAGCTGCTGAAGACATCATCAATCTGAAACGCCTCCAGGAACTGAGTATAGCATCTGAGACAGAAAACCACGAAAAGAAGGATATTTTAGTTTTGGTTGAGAAAGGAAGGACTCTGCACCTGCAGGGAATGGGACGAATGGATTTTTCCCTTTGGTACGCAGACATCCAGAAGGCTGCAGGAGGGAAGGCCAACACACTGAAGGATCAGCAGCTCAGCAGGAATGACATCCCCATCATAGTGGACAGCTGCATTGCCTTCATCACCCAGTATGGCCTGGGCCACGAGGGCATCTACAGAAAAAATGGAGCCAAATCCAGAATCAAGCTTTTGATGGATGAGTTCAGGAAGGACGCTCGCAATGTGAAGCTGCGTATCGGGGACAACTTCATTGAAGATGTGACTGATGTGCTGAAGAGATTCTTCCGTGAGATCGATGACCCCATCTTCATGGCTGACCTGCACCCCTACTGGAAGGATGCAGccaAGACATCTAATAAGATGCAGAGACTGGATAGATATAAGGAGCTCATCCGTGGATTGCCGCGGGTCAACCGGACCACTTTAGCAGCTCTCATCAGTCACTTGTACAGAGTACAGAAGTGTGCTGACCTTAATCAGATGTGCACAAAGAACCTGTCCCTGCTGTTTGCCCCTAGTCTCTTTCAGACAGATGGAAAAGGGGAGCATGAAGTGAAAATTGTAGAGGACCTCATTGACAACTACCTCTATGTGTTTGATATTGATGAAGAGCACAAAACCCAGATCGAACTGGAGATTAGTCTCATCACAACCTGGAAGGACACACAGCTCTCCCAGGCAGGAGACCTCATTATTGAAGTCTATTTAGAGGAGAAAACAGCTGACTGCTGCATCACTCTTAAaGTTTCTCCCACTATGTGTGCCGAGGAGCTAACTAACCAGGTGCTGTATCTGAGAAACGTCCCAGCTGGCGAGAATGTGTGGATGACCTTTGAAGTGATTGAGGATGGAGAACTTGAGCGGCCTCTCCATCCAAAAGAGAAGGTTCTGGAACAAGCCCTCCAATGGTGTAAGATGGCTGATCCCAGCTCAGCATACCTGTTGGTCAAGAAGGTTCCCAGGGCGGATGTAATAGATATCTTTACAGCCTACAAAAGTGAAATTATGAAGTTCGGTGTTCTAAAGTGCCGAGAGGAGACGCCCAAACTTCTGCAAGGAACCAAATTCCAGGAGCGTGGCTTCCAAATCAGAGACCACAAGTTACTCCTAATGAAGGATAAAAAAAGCAACAAACCAGAAAAGGAGTGGCCTCTAAAAACTGTGAAGATTTACGTTGGTATAAGAAGGAAGTTAAAACCGCCCACCAAATGGGGTTTCACTGTGATGATAGACAAACATCAGATGTACCTCAGTTGCTCCAGTGAAACGGAGCTTTGGGATTGGATGACCAGTCTGCTGAAAGCCCAGAACGATGACTTGCGGCCACCTGTGATGAGACGCCACTCCTCCTCTGATATCTCCAAGCAGAAGTTTGGCACCATGCCTTTAGTGCCCATCAGAGGAGAGGAGAGCAACACCAACTCCACCATGCTATCAGCTAACCAGACCCTGAGGAAGCTTCATGATAGGAGGACGCTTTCAATGTACTTTCCCATGAAGGTGCAGCAAGACTCTGTGGAGGAGCGGGATGAGAGCCCTGAGCCGCTCTACGAGGAGGTGGGTGATTTCAGTCTGCAGGTTCTGAAGTCTTTAGAGACCAGCTTCCGGACCAGTGCGCACGCCGAGACCCTGGAGGTCCCGCCCCGGCCCACCAGCCTCGGCCAGAGGACGACCGGCTCCCTGGACCGCGTGATCGGCCCAAACCCAGTGCGCTCTCTCTGTGCCGAGGGTCTGCGAAACCCCGGGGGCTCTCTGGACACTCTGGTGCAGGAGGAGCACCACAGCAGGCGCAGCCAGGGCAGACTGCAGAGCCCCTCAcgagagctgctgctgcaggagcTATCCACAGTCTTCAAAAAGCCACTGGCTGAGGAACAGCATAGTCCTGAGAGCCTGAAGTGAAGTGACTGAAATGTCTGAAATCTGACTGGTCTGAGTGAATGTATTGTCTGTCGTAGtcgagcagttttttttatgttttcctgCTCATGATGAGTTGAGCACACTTGTTGAACTTGTTGTTTCTAAAGTACATTGAATTTTCAGTGTTATAAAATTTATATAACTTACTTCAATGAAACGTGTAAACTTGTACCAAAGCACTAACAATTTTTAATagatgtattgtatgtatttgtatgaAAGTCTTTGTTTGTATGTAATTGAACTATActactgtactgtgtatatatatatatatatatatatattgccctAGTTAACAAAACAGATCCAGATCCAGTTGTGTGTCTTTTAGTGATCTGTTTTAGTACATGTTTTTGggccaaactaaacaaaaataagtgCCATCTCACACTTCTCAtcttttgaaaatatatttccAGCTTGAATTACTGTTTCACATCCTTGGTTTTTATATTGGTTTTTAAGTATTACTTCTCCAaattcatttattgtttattttttaatataaacggTGCCATAAACCACAATAAGCCCAGTCTGCATGCAAAAACTGGGCATTAACACAGTATTGTTCTTGtacagcaaataaaataaaacaatctgTATTACATACATCTTTACCAGGAACATGGTCAGTTCTAGAACTTTCGCCTTATTTTTGCCTGTAcaatttgttgtatttattaatttatttatatattcgcCAACATTCAGACCAATGActctgtatatatgtttatatacagtcattcaTTCAGACACATTGTCGTATGCAAGCAGAATGGAGCTTTTTTCAGCTCGACTTTGATCAGTAGAGGGCAGTGTAGATTTAGCACATAAATGCTCGACAATCTTGTTTGTTCCACTTAACTCTTCTCTACAGACATCTACAGATCTTGTATAGTACCTTATGTATGCTCTGCTACTGTATAATATTAATGAATTTGACCTATTTtctgctgatgtttttttttatatatatgttgagTTATTGTTCGTGCCATCCCCTTTTTGTTCTCTTGCCTGGAATGCAAAtgcttttgttttactgttataTTCACTTTTTGCTCTGATAGCATATCAGTATGCTTGTTGGTTAGGCTAATGTTGTAATAATGTTGTATatggcagtatttgttcagtgTTCTAAAGCTTGTGGTAGGATTGAAATGTCATTGTACACTGTAAAGGTTAAGGATCTTCTAGTTATAACTGCAGAAAATTTTGGTTTTGCCAAATGTGTTACTGAAACTGGAAaagtatattgaaatatatatgtCTACTTTTGAAA

Function

symbol description
arap3 Predicted to enable GTPase activator activity; metal ion binding activity; and phosphatidylinositol-3,4,5-trisphosphate binding activity. Acts upstream of or within lymphangiogenesis. Predicted to be located in cytoplasm. Is expressed in cardiovascular system; neurons; and somite. Orthologous to human ARAP3 (ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3).

NR:

description
PREDICTED: arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12490 ARAP3; Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU285275 False 1095 lncRNA 0.34 2 37165049 37167366
XM_007246456.3 True 6747 mRNA 0.47 34 37165034 37204385

Neighbor

gene id symbol gene type direction distance location
LOC111195788 NA coding downstream 58577 37100295 ~ 37106457 (-)
polr2g polr2gl,POLR2G,rpb7,polr2g,LOC106604162 coding downstream 78055 37083976 ~ 37086979 (-)
eef1g eef1g coding downstream 82828 37072586 ~ 37082206 (-)
LOC103034997 NA coding downstream 126303 37003908 ~ 37038731 (-)
LOC103039285 klhl4,LOC107710306,LOC107563598,LOC103356419 coding downstream 161399 36951881 ~ 37003635 (-)
LOC103033714 si:dkeyp-110e4.11,LOC108416539,LOC107741102,LOC107664778,LOC107717397,LOC107598365,LOC108268417 coding upstream 1854 37206239 ~ 37218291 (-)
LOC103038966 LOC108417621,LOC108268934,LOC107741049,LOC107662002,LOC107563594 coding upstream 76456 37280841 ~ 37285730 (-)
ccdc69 ccdc69 coding upstream 187685 37392070 ~ 37407429 (-)
gm2a gm2a coding upstream 210207 37414592 ~ 37421150 (-)
LOC103027906 LOC108416579,LOC108269025,LOC107662007,LOC107741056,LOC107664772,LOC107717388,LOC102314633 coding upstream 354309 37558694 ~ 37625939 (-)
G210173 NA non-coding downstream 36829 37127694 ~ 37128205 (-)
G210169 NA non-coding downstream 56945 37107700 ~ 37108089 (-)
G210120 NA non-coding downstream 293090 36871579 ~ 36871944 (-)
G210107 tdg,LOC107574736,LOC107679604 non-coding downstream 342928 36815671 ~ 36822106 (-)
G210110 NA non-coding downstream 359582 36805131 ~ 36805452 (-)
G210197 NA non-coding upstream 23876 37228261 ~ 37228612 (-)
G210223 lman2 non-coding upstream 94729 37299114 ~ 37301802 (-)
G210235 tmed9,LOC108416549,LOC107662005,LOC107664780,LOC107741051 non-coding upstream 104993 37309378 ~ 37314616 (-)
G210242 NA non-coding upstream 119022 37323407 ~ 37323626 (-)
G210306 NA non-coding upstream 381201 37585586 ~ 37586656 (-)
c24h12orf73 NA other downstream 354538 36809307 ~ 36810496 (-)
G210059 NA other downstream 454291 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 2405943 34709771 ~ 34759091 (-)
egf NA other downstream 2508550 34620461 ~ 34656484 (-)
G209660 NA other downstream 2890441 34234918 ~ 34274593 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 2323248 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 2409330 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 2439159 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 2728731 39933116 ~ 39940055 (-)
G210991 LOC103042126,LOC108416825 other upstream 3156873 40361258 ~ 40363237 (-)

Expression


Co-expression Network