G210347 (g3bp1,LOC107683011)


Basic Information

Item Value
gene id G210347
gene name g3bp1,LOC107683011
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 37677456 ~ 37683502 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU285470
CAAAACAGTACATCaagtttatttttgttctcTCGTCAGCAGAGTTGTTAAAATATGTCGTCATTCTTGATGAAGTGCAACAGTAGAAGGCAAACCGGATTCTTTACATGCTAGACAGTCACTCATACACAACCATGATTCAACTTGGCaacaattccaaataaaaccaTACTTGCACTTTGACCTGACAGCGGGCGCTAGCAATACACAGGATTGCCCGAGCAGTAAAAACACGTTCCTTTAAGAAACAGGGAGAGAACgctaaaaccaaaaaaagttGGGTTTTACCTTATCCACAATTCAAGTAGTTTTTGCTTGTCTACAACAAATTCAAAGTTCAAACTCAAATACAAGGAGGTGTCCAGATAAAAGGGGAGGCCACTGAACAGCCCAGGCGTGGCACGGAAACGGGGATGAGGGAAGCCGTTTGTTACTCGGGTGACTTTGCATCAGCAGTGATTTGACATGAAAGCTGCTTTCACTGGCGTGGTCCAGCATAGCGACCCTCGTTAGATCCTACTCCACGACCCGCACCAAAACTAGGCTTCTGGGCCATGCCGCCTCTGGGTGGTGGACCTCTTGGGCCTCCTATCCTGTCTCGTGGTCCTCCTGGGCCTCTCGGGCGGATGTCCCGCCGGTCTCCTTCCCGTGCTGAACGAGTCTTCTTTTCCTCCACGTTCAGACGGACATCACCTCTTAGCTTGATGGGCCTGTTGCTCAAGATCTTCTGCACTGGTTCAGAATCATCAAATACAACAAATCCAAAGTTGGGCAGTTTGCCACCACTGTTGATCCTCAGCTCTAGTACAGTGCCATACTGTTCAAAGAACTCCTTTAGTTCAGCCTTGTCCACGTCATGAGGAACATTTCCTACAAAGAGCTGCTGGCTGTCGGGATACCTGACCACCCTCCTCACTTCAGATTCTCCACCCTCACCCTCTCGCACTCCTCCTGGCCTTGGAGGTCTCTGTGTTGGAGGGGGACCTGGTCTTTGGTCACGTGGTCTCTGGTCTCTTTGAGGTCTCTGTGTTGTGGGCTGGACTTCTGTTTTTACTTCGACACGGGCTGAGTTGCTGGAGCTTTGACTACATGAGGGGGAATTCCTGAAGGTGGAACCACTCCTCCTTGGGGGAGATTTTTACTGGTGACTAAGGCCCAAGAGAAGGGccGGTTATCTTCTGGTACGGCAGGTGCAGGGTCAGCAGGTGTGGGTGATAGGGGAGCTCTCTGGGACTTCTCCACAGGATGGGACTCTGCCTGAATTACTGGCTCCTGTTTGAGCTCTACTGTAGAAGGCTCAGGCTCTGGTTCCGCCTCTGGTTCAGCCTGGGGCTCTGGGGTTACAACTGCCTCCTCCTGAGGGGCTTCTGGATCTGGGCATGGTGTCTGTTCGTAGAATGCAGCAGTCTCTTCCTGTGGCACCTCAGGTGAGTTCACCCTCTCCTCCAGGTCCTCCACTTCCTCCTCCGACTCCTCAGGAGGTTCAGAGTCCGAGTCCCCAAAGACCTCATCTTGATAGCGGAAAATGTCATTGTGTACGTAAAACTTGTTTGCGACAGTACCCTCAGGGGCCAACACAAAGGTTTGCATGAATTTCCTCATAGGCTGCATGTTGTTGGACAGTTCTCCCATCACCTGCACCACCACGCCCTCATTCAGGGTTGCATGGGCATCGACGTGCCTGATTTTAGTGTGGCAGTCACGGAAGCTCAGTGCCATCACTTTTTTGTGAATCTCCTACTGTCCATACACTGCCTCAGCTGGCTTCCCATTGGTATCCAGTCCTCCGTGCACATAAGAAGAGTTTTTGCCATAACCTGTGCAGGTAGTCAGGAGCCTGGTTCAGAAGAGTGTAGTACTGTCGGACAAACTCTCGCCCGACAAGCTGGGCACTTGGCTTCTCCATCACCATTTCTTTGGTCAACTGGTTTCAACAGGAGGGGGAGGCTCTAGTTTCAGTGTAGAAATGTCCAGCGGCTTTATGTAATCGCCTCCTGCGCCGGGTGGAGTGAGAATGGCAGCGCTTGCTTAGCCGGTTTCAAATTCGCTTCAACT

Function

symbol description
g3bp1 Enables mRNA 3'-UTR binding activity. Predicted to act upstream of or within innate immune response. Predicted to be located in cytoplasmic stress granule. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol. Is expressed in neuromast. Orthologous to human G3BP1 (G3BP stress granule assembly factor 1).

NR:

description
PREDICTED: ras GTPase-activating protein-binding protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU285470 True 2055 lncRNA 0.51 12 37677456 37683502

Neighbor

gene id symbol gene type direction distance location
LOC103027906 LOC108416579,LOC108269025,LOC107662007,LOC107741056,LOC107664772,LOC107717388,LOC102314633 coding downstream 51517 37558694 ~ 37625939 (-)
gm2a gm2a coding downstream 256306 37414592 ~ 37421150 (-)
ccdc69 ccdc69 coding downstream 270027 37392070 ~ 37407429 (-)
LOC103038966 LOC108417621,LOC108268934,LOC107741049,LOC107662002,LOC107563594 coding downstream 391726 37280841 ~ 37285730 (-)
LOC103033714 si:dkeyp-110e4.11,LOC108416539,LOC107741102,LOC107664778,LOC107717397,LOC107598365,LOC108268417 coding downstream 459165 37206239 ~ 37218291 (-)
glra1 glra1,LOC107717398,LOC107662012 coding upstream 10551 37694053 ~ 37776716 (-)
thoc3 thoc3,LOC107664783,LOC107662035,LOC107598370 coding upstream 360519 38044021 ~ 38048482 (-)
LOC103024433 si:dkey-280e21.3,LOC108417838,LOC108268502,LOC105913081,LOC107664720,LOC107741091 coding upstream 366736 38050238 ~ 38075468 (-)
LOC103022549 tmem216,LOC108416639,LOC108268819 coding upstream 392627 38076129 ~ 38079211 (-)
LOC103023908 NA coding upstream 395885 38079387 ~ 38109064 (-)
G210339 NA non-coding downstream 30587 37646192 ~ 37646869 (-)
G210317 NA non-coding downstream 44761 37632392 ~ 37632695 (-)
G210314 NA non-coding downstream 47550 37626839 ~ 37629906 (-)
G210306 NA non-coding downstream 90800 37585586 ~ 37586656 (-)
G210242 NA non-coding downstream 353830 37323407 ~ 37323626 (-)
G210365 NA non-coding upstream 141717 37825219 ~ 37825820 (-)
G210372 NA non-coding upstream 173536 37857038 ~ 37857373 (-)
G210445 NA non-coding upstream 341922 38025424 ~ 38034469 (-)
G210448 NA non-coding upstream 438993 38122495 ~ 38124887 (-)
G210453 NA non-coding upstream 534773 38218275 ~ 38218728 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 473071 37165034 ~ 37204385 (-)
c24h12orf73 NA other downstream 866960 36809307 ~ 36810496 (-)
G210059 NA other downstream 966713 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 2918365 34709771 ~ 34759091 (-)
egf NA other downstream 3020972 34620461 ~ 34656484 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 1844131 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 1930213 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 1960042 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 2249614 39933116 ~ 39940055 (-)
G210991 LOC103042126,LOC108416825 other upstream 2677756 40361258 ~ 40363237 (-)

Expression


Co-expression Network