G210502


Basic Information

Item Value
gene id G210502
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 38533843 ~ 38632236 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU285667
agcagacaaaccaaccctattatcaggatacagatttttaatatcatgatatttctgtgtcatgatatattgtatacgatataatattgcccacccctagttcaaATCCAGATGTATTTCAAAGaacactgtgtaaaatattgtaaatattctgCCGGAACAAAACCTTGTGTCTCCAAAAAGATAAGCAAATAATTttgcaataattttttttttaatggaagttaACGTAAGCTAATTTTATATGAAGTAAATATGGACCATTTCAATTGGTCAGTTAATCTGAAGTTCATCAAATTTCACATGGGTCTTAATGTCAACTGGCTTTTTCACTAAACGCCCAGAAAGAAATGAAGATACGAGGTGGTGGTCCAACTGTGAAAATCAGTTTGAAGTTCATTTGAAGATTTACCAAATATGCTGCTACACTAAAGGCAGCCCTAACATGAAGTTTACTAGAGCAGTAGCGTTTACTAGCATAGCATGCTAAACATTGCACATTGTAAGTGTTGTAAGGTGCCGTGATTCTGTGGTACTTTTTCTGTTTCAGAATGTATTTTGTGGcaagtaccaaaaaaaaaaaaaacacaatagcagtTAAACTGGATCCTAACTAGTGAGTTACCATTTTTTATTAGGGATGTCCCGATCCAGTCCAAGCATATTTTAAAGGATCGCACATTGGTTACTTCAGTCCCAATCCTGTTTCAGGTCTTAGTTTTAACTATAGTGTTCAGAGCACCATCTGGTGTCGTCAAGGCGCTGTTAACGATTATCATTATTGCCCAGCCAgcagcactgaggagagttctcagaaagtaaattaaaaagtcTAGTTAAAGTTAGAGTGTAGAACTATTTAACAGTGGAGCATGAAAACACAATATCTTAGACTATATAAAACTATTGTGGAAatgctgttttattgtttattattagaacagcacacctttttattttgtttttaagccAGTGCTGAACAGTGCACTTAGATCTAAGTGAAAACTAGTGCTAATTCAAATAAACACATGCTATAGAAACCCAAATCATAGCATATTTATCTCACTATAAAAGAgttacatcattattattagcagTCAGACTGGAATCTAACATATTAAATacactaaaattaaacaataatacacgagagggaatGCTATACTGTGTAATCTGCAGATTTATGGATCTTtgcattttgagttaaagaggacgaaaaaatacgatctgtttgatCATAAACACTCTGCaacttaaaatagttccattgctgctctgtttgtagctgcacggtttggcttgtaagtgctgcatcgttgctaGTATACCTGTATGTAGCGAGTAATACATGGATAACGGAACTCATAGAAGGcctcccagccaatcacagtgcagggtCTGAAAAAACTgtggtaaaataaaacaataataatacaaaaaaatggaaaatcacTACTAAACCAAATAGATCATTATTTAAActgttgcaaaaaataaatagagtttTAATCAGTATTAATCAGCTGCACATCTTATCTAAACTGTGTGGcagctttattcatttaatcacaAAAATCAGATTGAATTGGATCAGATCAATATTAAGTGATATTCAGCATTAATAGATCTGGATTGGATCAGGGTTTGGGACATCCCTAATTTCTGCATAATTTCAATAAACTGAAGCCACTGactatataacatttatatacagtgtgGAGATGTAGAGGTGGTATTTGGTTTGCTGCAGTGTGAGTACTGCATGGTCTGAGACAGCAGCCTCCCTGCTGTTACAGCGGCTCACCACTAGAGGCAGTGAAGCACCATCTGCAGAGCCTCCTCTGGCAGCACTGTCCACTCCTCACTCACAGTGTGTGCTCATTAGGCTCGGAGCTGTGGACCCTGTGTGCTGCACTGTGCGGTGAGGGCGTGCTTGGTGAGCAGGTATACTGGGATGTGCACTGAAATGGGATGAGCGGTGCAGCACTGCAAGCTTTTTCCCAGAGCATTACCTCAGTCAGTATTGAGCTTAATCCCTGAAAACAGAACGGTAGGCTCGGCTACATTGCCTGGATTCTCTCACAATCGCCTTACAGGGGCTCCGCTGAGAAGCAATCACTTGCCTTCTGTTCTCTGGTGAAGCTATGCTCTGATCCAGGAGTGAATTccctcttttatttatttgtatttattttacattcgcCAAAGCCCTGCAATGTAGGAGAATACGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU285667 True 2233 lncRNA 0.38 3 38533843 38632236

Neighbor

gene id symbol gene type direction distance location
LOC103046861 LOC108417963,LOC100136477,LOC101077011 coding downstream 64555 38397431 ~ 38469288 (-)
slc26a2 slc26a2,LOC107662016,LOC107575649,LOC107664781 coding downstream 172114 38352483 ~ 38361729 (-)
htr4 htr4,LOC107664776,LOC107662017,LOC108269380,LOC107598324 coding downstream 277175 38147823 ~ 38256668 (-)
LOC103038351 NA coding downstream 399514 38132892 ~ 38134329 (-)
LOC103036455 NA coding downstream 405056 38112045 ~ 38128787 (-)
klhl3 klhl3,LOC107741071,LOC107677728,LOC106604937 coding upstream 366628 38998864 ~ 39011436 (-)
hnrnpa0 hnrnpa0,LOC108418205,LOC105905838,LOC107741073,LOC107664751,LOC107598338 coding upstream 380042 39012278 ~ 39016030 (-)
LOC103037382 LOC108418154 coding upstream 393909 39026145 ~ 39034037 (-)
LOC103043921 purab,LOC103043921,LOC108442604,LOC108268831,LOC105897443,LOC107559286,LOC107660791,LOC107660159,LOC107758524 coding upstream 512600 39144836 ~ 39147132 (-)
eif1ad eif1ad coding upstream 582974 39215210 ~ 39218755 (-)
G210501 NA non-coding downstream 5061 38527853 ~ 38528782 (-)
G210506 NA non-coding downstream 13349 38520163 ~ 38520494 (-)
G210477 NA non-coding downstream 161645 38349959 ~ 38372198 (-)
G210457 NA non-coding downstream 261981 38271625 ~ 38271862 (-)
G210453 NA non-coding downstream 315115 38218275 ~ 38218728 (-)
LOC103046144 NA non-coding upstream 205216 38837452 ~ 38933662 (-)
G210573 NA non-coding upstream 349078 38981314 ~ 38981959 (-)
G210576 NA non-coding upstream 353472 38985708 ~ 38986415 (-)
G210580 NA non-coding upstream 390510 39022746 ~ 39023668 (-)
G210590 NA non-coding upstream 443901 39076137 ~ 39081597 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 1329458 37165034 ~ 37204385 (-)
c24h12orf73 NA other downstream 1723347 36809307 ~ 36810496 (-)
G210059 NA other downstream 1823100 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 3774752 34709771 ~ 34759091 (-)
egf NA other downstream 3877359 34620461 ~ 34656484 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 895397 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 981479 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 1011308 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 1300880 39933116 ~ 39940055 (-)
G210991 LOC103042126,LOC108416825 other upstream 1729022 40361258 ~ 40363237 (-)

Expression


Co-expression Network