G211119


Basic Information

Item Value
gene id G211119
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40629372 ~ 40717113 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU286626
TCATTTGTATACATgtGTATGTTTTTCCAAAACAAATACTAGCTAACAGATAAAGTGCAAATCTAACTAAAAACAGTGACTATTCGAACAGCACAGTGCCGATATTTAGTTAAAATATGGCAGCAGAACACATTTCTATCCACAACAACTGCAGGCCTACAATGTAGGCGAATCAATGAGAGTTGGCTCAGCACTGAAATCACAGTAACTGACACTGGCTGGCAGGTATGTTGAGgtacattttgtatttgttagTGCATAAACTTTAAAAACCTATCTATAATAATGCAGCTGTTGTGCCTCccagtaaaacattgttttgttaaaaacacatggaactatttttttaagacaCAGGCTGGTCTTCTTCAAAGACTAATTCAGaaattaaaactaaacctgCAAGCACACTTTACCACAGAGGAATTATTACAGTTATGCATCAATCTACTGTAATTCTTGTTTGTCTTTCCCAGTACAAAAATATGTGCCTATGTACCCATTGTAAAGTAAATCAGTGACTGTTACCTCATCCAATTTCTGTCAGATTctatgctaatgctatttaGCCACAGTAAAAATGTGTACAGTGTAAATACTTACTTCTTTTCAGTGCATCATAAATCACAAGACACCTTCTACAACGGCCACCTCTATCAACCTTATTAACATCAAGCAATAAATAGCAAGCTTCCCTTCATTAAACCCTTATTTACTTTCCTATGCTGGCATTTCCTACATTGGCTTTTCCCTGATCCTCCACCTTCTTAATAGCTGCCTGAATTTTGGCCTGGTCACCGAGGAGTTCTCGAGGCTTCACAGGGTGAAGATTTTCATCCAACTCCAGAAGAACCGGTATTCCAGTGGGAAGAGTAACATTGACGATGTCGGTATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU286626 True 895 lncRNA 0.38 2 40629372 40717113

Neighbor

gene id symbol gene type direction distance location
LOC103027945 NA coding downstream 38904 40584365 ~ 40590468 (-)
LOC103028575 LOC108419324,LOC108269048,LOC107693229 coding downstream 46419 40570582 ~ 40582953 (-)
LOC103045095 LOC103045095,LOC107590823,LOC107753557,LOC108268426,LOC106608917,LOC101062121 coding downstream 274096 40327839 ~ 40355276 (-)
gtse1 NA coding downstream 303932 40318789 ~ 40325440 (-)
actr6 actr6,arp6 coding downstream 311560 40312884 ~ 40317812 (-)
LOC103032053 kctd15a,LOC103032053,LOC108419575,LOC108269135,LOC107678290,LOC107554942,LOC107661476,LOC107716706 coding upstream 49940 40767053 ~ 40787591 (-)
LOC103031733 chst8,LOC108416858 coding upstream 78424 40795537 ~ 40870630 (-)
adal adal,LOC107753575 coding upstream 174418 40891531 ~ 40896561 (-)
LOC103033419 cplx3,LOC103033419,LOC107753702,LOC107576377,LOC107678284,LOC107661513,LOC107554944 coding upstream 179779 40896892 ~ 40902164 (-)
LOC103033740 csk,LOC108419600,LOC106562350 coding upstream 195970 40913083 ~ 40945688 (-)
G211085 NA non-coding downstream 17652 40611097 ~ 40611720 (-)
G211058 NA non-coding downstream 62195 40566889 ~ 40567177 (-)
LOC111195793 NA non-coding downstream 76677 40551912 ~ 40552695 (-)
LOC103026547 NA non-coding downstream 77593 40550281 ~ 40551779 (-)
LOC111195848 NA non-coding downstream 79100 40544773 ~ 40550272 (-)
G211141 LOC108419529,LOC108269134 non-coding upstream 1207 40718320 ~ 40726184 (-)
G211242 NA non-coding upstream 173701 40890814 ~ 40911636 (-)
G211450 NA non-coding upstream 1136685 41853798 ~ 41865986 (-)
G211449 NA non-coding upstream 1149647 41866760 ~ 41872555 (-)
G211517 NA non-coding upstream 1363607 42080720 ~ 42080968 (-)
LOC103026726 cnot4,cnot4a,LOC107661486,LOC107753567,LOC107590814 other downstream 59224 40558684 ~ 40570148 (-)
G210995 NA other downstream 251019 40372805 ~ 40378353 (-)
G210991 LOC103042126,LOC108416825 other downstream 266135 40361258 ~ 40363237 (-)
LOC103023530 LOC103023530,LOC108418701 other downstream 689317 39933116 ~ 39940055 (-)
atp8a1 atp8a1 other downstream 833429 39643544 ~ 39795943 (-)
LOC103035761 LOC108419823,LOC103035761,LOC105018411,LOC103373780,LOC104940444 other upstream 442117 41159230 ~ 41219443 (-)
LOC103037199 tmem60,LOC108416913,LOC107661463,LOC107578479,LOC107753588,LOC107696252 other upstream 589833 41306946 ~ 41310751 (-)
LOC103022682 NA other upstream 876218 41593331 ~ 41600623 (-)
G211539 NA other upstream 1488023 42205136 ~ 42205636 (-)
LOC103029763 NA other upstream 1564644 42281757 ~ 42361599 (-)

Expression


Co-expression Network