LOC103037199 (tmem60,LOC108416913,LOC107661463,LOC107578479,LOC107753588,LOC107696252)


Basic Information

Item Value
gene id LOC103037199
gene name tmem60,LOC108416913,LOC107661463,LOC107578479,LOC107753588,LOC107696252
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 41306946 ~ 41310751 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU286910
TCGAGCCTCTGCTGGCTCAGTGTTTGAGCTGAGAGTCAGGAGTCAGAAAACGACGGTGTTTTGAAAGACAGGCAGAGATGAAGCTGAACACTCTAAGATGATCTAAACTGTTCttctggttaaaaaaaagctatcCAAGCGATAAGTCACACTCTGTTTAAATAGTTTGGTTTGGAACCACCCACCTGAGCTGTCCTGAATGAGCATGTCCCTTGCTCAGCGAGTGCTCCTCACATGGATCTTCAGCCTCATCTTCCTCATCATGCTGGTCCTCAAGTTGGACAAGAAGATCCAGTGGAGCTGGTTCCTGGTCTTCCTCCCTGTGTGGACCTTCGACGCCATTCTTCTGCTCATGCTCATCATCAAAATGGCAGGCCGTTGCAAACCAGGGTTTGACCCGCGCAATGGTGCAGAGAACTTGAAGAAGCGTGTTTGGTACTTCACAGCTATTTTGTTAAAGCTGGCCTTCTGTCTGACACTGTGTGTAAAGCTGGAGCGCCTGATAGAGATTGGGCTAAGTTTTGTCTGTATCCCTCTCTGGACTCTTCTGATTGGAGCGATGGTGGAGCTGGGCTTCAGCGTCTTTAACTTCCAGAGGGACTGAAAACAAGACACTGAGGATACTGATGCTAGCTTATTGTTGGAAAAGTAACTTGTAACATATAGTCTGTCTAACACTTATTTAAAAATTCCCACCTGCAGCAGAGTAACATGACCCTGAATGATTTATTCTGTAAATTCTTGAGGACACATATTTTCTGTATGCTTTTTATTAGTGGGTGATCTGGAATTACCTTAATATTTTTGATTAAAGGTGCttccattttgttttatttatcttttaaggTTTTAAAGGTTTTGTTGGTCTGGTAAACATTAGGACGAGAATGAAAGTTCTTGTTTGATTCTCATGTCCAGTGTTTAACATGGACATACAGTGTTGTGCAAAGTTATAGACacgtgaccaaaaaaaaaaagggtagcGTTATGTCCGAAAATGGTTAGATAAATACTGTATGCATATGTACATactttacatttatattgttattttttcttttaagattTGTTATCACAGGTGTCTTAGtattttgcacaatactgtatgttGTCAATATcagcattttttctttcttctttgtaTGGATGAATGGACCATTAGTAAGGctttaaaatgacttgaaataatgctgcattccatttgAACGCATTTAATTATAGAAATTTAATTTCGGGAATTTCACCTTGATCGCCCCCCACTACTTAGAATGTCAGGAGAGCTTCAGAATCCAAGGTGGCTGCACCACACAACAGCAGtgataataatacagtatataacaacTTCTATTTTGTTCACTTCTAAGTTCACACAGTCCAGCATCTCTGTGAACATGTTTAATGCCTTCAGCTAACAGTTTTTGGAAATGTTTGAAATAGTGTCTGattctgttttaatgtttaactgGAACTCTGTCAGCTTGGTTTCATGTAAAGCCCCAACTTACAACCTCTGAGgtaaatggaatgcagcataaattatttttgacaTAGAATTCCATTGAAAGCTTagaatgttttgttttctcctgtaaagttgctgttttagagatgcTAATACATATCCATTCAAACCAAAGAGGCATCACCAGGGATTGAACTAAGTTTGACCTGATAACAGGCCCAGTGCTTAGATGGCTGCGctactgattttttattttgtattgtttaggTTGGTCACGTTCTGATGTTACATAAGTACCTTTCATTTCTGAAGGGaatgtttattttctctctatGCAATCTGTAACTACCTACTCAGCTAAAAACATGTTTGACTTCTATGTTTTCCTAAAATCAACATTGTgttattatttctattaataTCACAGGCTGGAGATAGGGAAAAGGTCAGCTCATTTTTCACCATTACATCCTTACAGTGCAGCTTTGAGACAATTTCATGGACGGCGATTTGATGATTTCCAGACCCAGTCTTCTCTGGCTTTTAAGTGCTAACATTAGCATTCTTAGCTGGAATGATGGAGAGTCACTCAAGCCAAACTTGTAAACACTTGTAGGCTCCAATCTGTTTCTCATACAGCACAGTGAAAGTTTTTTGGACGTAGTGGGAAGTGGTTCTGAATCCAGACGTAGCACTTCAATCTGTCCATAATTATAACAAACCATTCATTATTTATCACAGTGTATACAGAACCCAAGCTCACCTGCAGTAAAAAGCTGTGGTGTGACAGCGTCACGTTTTGCTGGAGATGTGTTAATAATGCACAGCATGGTTATCTAATGGTTGTGTTTCAGTTGAGAGCTCCAGATGTTTGATGGTGAGGAGGTGTTTACCTTTCCTGCGTTGGCTGCAGTTGGCATTGTTAAAAGCTGTATTGCACTCAGTCTGCTTCAGTGTTCACGCTCTCTACAGCTCCACAGAGGCCTGGCTCGCAGCTGACTCTAGAAGCACGCAGACAGAGACGTTCCAAGTTACTGTAGCTTAGTCAGCACTTGCATTGTCTTTCAAACACTGTGCTGATcaaatgtttacacacaatCATATGCCAAATTTGAGCAC
>XM_007252870.3
GGAGCGCTAGGGGGCGTCGAGCCTCTGCTGGCTCAGTGTTTGAGCTGAGAGTCAGGAGTCAGAAAACGACGGTGTTTTGAAAGACAGGCAGAGATGAAGCTGAACACTCTAAGATGATCTAAACTGTTCttctggttaaaaaaaagctatcCAAGCGATAAGTCACACTCTGTTTAAATAGTTTGGTTTGGAACCACCCACCTGAGCTGTCCTGAATGAGCATGTCCCTTGCTCAGCGAGTGCTCCTCACATGGATCTTCAGCCTCATCTTCCTCATCATGCTGGTCCTCAAGTTGGACAAGAAGATCCAGTGGAGCTGGTTCCTGGTCTTCCTCCCTGTGTGGACCTTCGACGCCATTCTTCTGCTCATGCTCATCATCAAAATGGCAGGCCGTTGCAAACCAGGGTTTGACCCGCGCAATGGTGCAGAGAACTTGAAGAAGCGTGTTTGGTACTTCACAGCTATTTTGTTAAAGCTGGCCTTCTGTCTGACACTGTGTGTAAAGCTGGAGCGCCTGATAGAGATTGGGCTAAGTTTTGTCTGTATCCCTCTCTGGACTCTTCTGATTGGAGCGATGGTGGAGCTGGGCTTCAGCGTCTTTAACTTCCAGAGGGACTGAAAACAAGACACTGAGGATACTGATGCTAGCTTATTGTTGGAAAAGTAACTTGTAACATATAGTCTGTCTAACACTTATTTAAAAATTCCCACCTGCAGCAGAGTAACATGACCCTGAATGATTTATTCTGTAAATTCTTGAGGACACATATTTTCTGTATGCTTTTTATTAGTGGGTGATCTGGAATTACCTTAATATTTTTGATTAAAGGTGCttccattttgttttatttatcttttaaggTTTTAAAGGTTTTGTTGGTCTGGTAAACATTAGGACGAGAATGAAAGTTCTTGTTTGATTCTCATGTCCAGTGTTTAACATGGACATACAGTGTTGTGCAAAGTTATAGACacgtgaccaaaaaaaaaaagggtagcGTTATGTCCGAAAATGGTTAGATAAATACTGTATGCATATGTACATactttacatttatattgttattttttcttttaagattTGTTATCACAGGTGTCTTAGtattttgcacaatactgtatgttGTCAATATcagcattttttctttcttctttgtaTGGATGAATGGACCATTAGTAAGGctttaaaatgacttgaaataatgctgcattccatttgAACGCATTTAATTATAGAAATTTAATTTCGGGAATTTCACCTTGATCGCCCCCCACTACTTAGAATGTCAGGAGAGCTTCAGAATCCAAGGTGGCTGCACCACACAACAGCAGtgataataatacagtatataacaacTTCTATTTTGTTCACTTCTAAGTTCACACAGTCCAGCATCTCTGTGAACATGTTTAATGCCTTCAGCTAACAGTTTTTGGAAATGTTTGAAATAGTGTCTGattctgttttaatgtttaactgGAACTCTGTCAGCTTGGTTTCATGTAAAGCCCCAACTTACAACCTCTGAGgtaaatggaatgcagcataaattatttttgacaTAGAATTCCATTGAAAGCTTagaatgttttgttttctcctgtaaagttgctgttttagagatgcTAATACATATCCATTCAAACCAAAGAGGCATCACCAGGGATTGAACTAAGTTTGACCTGATAACAGGCCCAGTGCTTAGATGGCTGCGctactgattttttattttgtattgtttaggTTGGTCACGTTCTGATGTTACATAAGTACCTTTCATTTCTGAAGGGaatgtttattttctctctatGCAATCTGTAACTACCTACTCAGCTAAAAACATGTTTGACTTCTATGTTTTCCTAAAATCAA

Function

symbol description
tmem60 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM60 (transmembrane protein 60).

NR:

description
PREDICTED: transmembrane protein 60-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU286910 True 2581 TUCP 0.40 2 41306946 41310735
XM_007252870.3 False 1874 mRNA 0.39 2 41307669 41310751

Neighbor

gene id symbol gene type direction distance location
LOC103038802 NA coding downstream 53355 41235100 ~ 41253591 (-)
LOC103036594 LOC103036594,LOC108419838,LOC107753583,LOC107554952,LOC107661466,LOC108268783,LOC107574131,LOC107716716 coding downstream 83121 41204105 ~ 41223825 (-)
LOC103036286 fbxl14,fbxl14a,fbxl14b,LOC107554951,LOC107661467,LOC107574141 coding downstream 104328 41200075 ~ 41202618 (-)
LOC103021433 LOC108419726 coding downstream 154916 40983650 ~ 41152030 (-)
edc3 edc3,LOC107678287,LOC107716710,LOC107661473,LOC107753578 coding downstream 347415 40951018 ~ 40959531 (-)
immp2l immp2l,LOC107716721,LOC107574088,LOC107696251,LOC107753590,LOC106573249 coding upstream 14206 41324957 ~ 41471949 (-)
dock4 dock4,si:dkey-81e3.1,LOC108268692,LOC107554957,LOC107661459 coding upstream 162602 41473353 ~ 41578514 (-)
LOC111195800 NA coding upstream 290355 41601106 ~ 41606198 (-)
tmem168 tmem168 coding upstream 297326 41608077 ~ 41615191 (-)
bmt2 bmt2,zgc:153606,LOC107716726,LOC107696259,LOC107753593 coding upstream 305802 41616553 ~ 41625200 (-)
G211242 NA non-coding downstream 395310 40890814 ~ 40911636 (-)
G211141 LOC108419529,LOC108269134 non-coding downstream 580762 40718320 ~ 40726184 (-)
G211140 LOC108419529,LOC108269134,LOC108431712,LOC105892636,LOC107554941 non-coding downstream 588744 40715530 ~ 40718202 (-)
G211119 NA non-coding downstream 589833 40629372 ~ 40717113 (-)
G211450 NA non-coding upstream 543047 41853798 ~ 41865986 (-)
G211449 NA non-coding upstream 556009 41866760 ~ 41872555 (-)
G211517 NA non-coding upstream 769969 42080720 ~ 42080968 (-)
G211528 NA non-coding upstream 871625 42182376 ~ 42182687 (-)
G211532 NA non-coding upstream 882563 42193314 ~ 42195273 (-)
LOC103035761 LOC108419823,LOC103035761,LOC105018411,LOC103373780,LOC104940444 other downstream 87503 41159230 ~ 41219443 (-)
LOC103026726 cnot4,cnot4a,LOC107661486,LOC107753567,LOC107590814 other downstream 736798 40558684 ~ 40570148 (-)
G210995 NA other downstream 928593 40372805 ~ 40378353 (-)
G210991 LOC103042126,LOC108416825 other downstream 943709 40361258 ~ 40363237 (-)
LOC103023530 LOC103023530,LOC108418701 other downstream 1366891 39933116 ~ 39940055 (-)
LOC103022682 NA other upstream 282580 41593331 ~ 41600623 (-)
G211539 NA other upstream 894385 42205136 ~ 42205636 (-)
LOC103029763 NA other upstream 971006 42281757 ~ 42361599 (-)
G211691 mrpl11 other upstream 1452450 42763201 ~ 42847764 (-)
G211912 cfl1,LOC107658066,LOC107601108,LOC107661397,LOC107560979 other upstream 1692654 43003405 ~ 43025465 (-)

Expression


Co-expression Network