LOC103022682


Basic Information

Item Value
gene id LOC103022682
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 41593331 ~ 41600623 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU286977
GTTTTGGGAGGACTTTTATTTGCAGGTTTCCCgccaaattttatttattttttttaacacaatgaGTTGTCTGTTTGGACTAGCATCATTCATGGTTGTTTTGTTGGCAGGTATAGGCTTTTATGGCTGTTTGTTCATATAGGATAGAAGGAAATGAAATTTGCCTTTAAATTGGATCAGGTTGAAATTGATGAGTAAGTAGGCATTATTTGATCTGGTTAAAATGGATTTTGGATTGTTTGCGttcttggtgttttttttagtgggTGTGATCAGTAATCACACTTTggtgcaaactaaaacaaacacagGTTTTACTTTCCTCCTGTTTCTGGTTAAACTTTAAAGCCATGACCTTAGTGGCTAGTACGTCTTGGATATTGTGGGCTGAATCACACAGTTTAGGATTGGTAAACACCCAACGGCTCCTGCTCTCATGTCCTCCTCTTTGTCACGGTGGAGTGTACAGACCCAGTGAGTGGCGTGAGCACTCGAGGTGTGCTGACCCTGTGTGAGCTGGCCGGCTCAGAGCGCATCTCTAAAACACAAGCCACTGGCCAGCGGCTCACAGAAACGGCAGCCATCAACAAGTCTTTGATGGTCCTGGGACAGgTGTTTGGGGCTCTGAGGTCTAACTCTCTTCATGTGCCTTTCCGGAATTCTAAACTCACTCACGTGCTCCAGCCCTGTCTCAGTGGTGATGCTAAGATGTGTGTAATTGTGCACGTTAGTCCAGATGTGGAAGACGCTGCAGAGACTCTGAACACTCTTACGTTTGGAACGTCCATTCGACAGATCACTCTGGGCAAACCGCCACAGAACAGAACTCAGATAAAGACCACTAAGGCTGAGAAGTAACTTGATGAGAAATGAGTGAATAGCTCTATATTGACCCAGCCTTCCCagagtttggtttgatttccATTACGGGAATTTTctattgtatataatataatgtatattgtcaCTATCGCACAAAAaacttttgtttatatattttgctgtttttgatcTTTACACATTGGACTTGAGGAAag
>XM_015606784.2
taaaaaaaaacatttaaataagtcaattttaatataaaaatgcataaaagaaacatgataaaactaaagtcctaaTTCCTTGTTAAATCTATAACCAACATTTTAGAAGCAAGTATATGAGGAGATTCTACCCATGATAACTTCCTGTTTGGATGGATACAATGTATGTATCCTGTCATATGGCCAGTCAGGCTCTGGGAAGAGCTACACAATGATGGGCCTTAAAGACAATCCTGGGATCAACATCCGGTCAGTCACAGAGTTACTGCGCTtgtgtaaagagagagaaaactacACATACATGATTAAGATTTCAGTGCTGGAGATCTATGTGGAGAGCCTGATTGATCTCCTGTCTGAGAACCGGCAGACTGAGGTGGAGATCCGTGGTCAGGGCAGGTCAGTGACCGTTCCCACTCTGACGCAAGTGGAGGTAAAAACAGAGGAAGACATTCTAAACATCATGGAAATGGTGGGGCGAAACTCCCACCTCCATTCCAATGAAGCAAATGCAGAGAGCTCCTGCTCTCATGTCCTCCTCTTTGTCACGGTGGAGTGTACAGACCCAGTGAGTGGCGTGAGCACTCGAGGTGTGCTGACCCTGTGTGAGCTGGCCGGCTCAGAGCGCATCTCTAAAACACAAGCCACTGGCCAGCGGCTCACAGAAACGGCAGCCATCAACAAGTCTTTGATGGTCCTGGGACAGgTGTTTGGGGCTCTGAGGTCTAACTCTCTTCATGTGCCTTTCCGGAATTCTAAACTCACTCACGTGCTCCAGCCCTGTCTCAGTGGTGATGCTAAGATGTGTGTAATTGTGCACGTTAGTCCAGATGTGGAAGACGCTGCAGAGACTCTGAACACTCTTACGTTTGGAACGTCCATTCGACAGATCACTCTGGGCAAACCGCCACAGAACAGAACTCAGATAAAGACCACTAAGGCTGAGAAGTAACTTGATGAGAAATGAGTGAATAGCTCTATATTGACCCAGCCTTCCCagagtttggtttgatttccATTACGGGAATTTTctattgtatataatataatgtatattgtcaCTATCGCACAAAAaacttttgtttatatattttgctgtttttgatcTTTACACATTGGACTTGAGGAAagcaccaatagaaatgctccaaaataaaaTCTTCATACACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU286977 False 1037 lncRNA 0.42 5 41593372 41595965
XM_015606784.2 True 1172 mRNA 0.44 6 41593331 41600623

Neighbor

gene id symbol gene type direction distance location
dock4 dock4,si:dkey-81e3.1,LOC108268692,LOC107554957,LOC107661459 coding downstream 14817 41473353 ~ 41578514 (-)
immp2l immp2l,LOC107716721,LOC107574088,LOC107696251,LOC107753590,LOC106573249 coding downstream 121382 41324957 ~ 41471949 (-)
LOC103038802 NA coding downstream 339740 41235100 ~ 41253591 (-)
LOC103036594 LOC103036594,LOC108419838,LOC107753583,LOC107554952,LOC107661466,LOC108268783,LOC107574131,LOC107716716 coding downstream 369506 41204105 ~ 41223825 (-)
LOC103036286 fbxl14,fbxl14a,fbxl14b,LOC107554951,LOC107661467,LOC107574141 coding downstream 390713 41200075 ~ 41202618 (-)
LOC111195800 NA coding upstream 483 41601106 ~ 41606198 (-)
tmem168 tmem168 coding upstream 7454 41608077 ~ 41615191 (-)
bmt2 bmt2,zgc:153606,LOC107716726,LOC107696259,LOC107753593 coding upstream 15930 41616553 ~ 41625200 (-)
LOC103022995 NA coding upstream 27200 41627823 ~ 41633902 (-)
LOC103043124 LOC108420127 coding upstream 36712 41637335 ~ 41652545 (-)
G211242 NA non-coding downstream 681695 40890814 ~ 40911636 (-)
G211141 LOC108419529,LOC108269134 non-coding downstream 867147 40718320 ~ 40726184 (-)
G211140 LOC108419529,LOC108269134,LOC108431712,LOC105892636,LOC107554941 non-coding downstream 875129 40715530 ~ 40718202 (-)
G211119 NA non-coding downstream 876218 40629372 ~ 40717113 (-)
G211450 NA non-coding upstream 253175 41853798 ~ 41865986 (-)
G211449 NA non-coding upstream 266137 41866760 ~ 41872555 (-)
G211517 NA non-coding upstream 480097 42080720 ~ 42080968 (-)
G211528 NA non-coding upstream 581753 42182376 ~ 42182687 (-)
G211532 NA non-coding upstream 592691 42193314 ~ 42195273 (-)
LOC103037199 tmem60,LOC108416913,LOC107661463,LOC107578479,LOC107753588,LOC107696252 other downstream 282580 41306946 ~ 41310751 (-)
LOC103035761 LOC108419823,LOC103035761,LOC105018411,LOC103373780,LOC104940444 other downstream 373888 41159230 ~ 41219443 (-)
LOC103026726 cnot4,cnot4a,LOC107661486,LOC107753567,LOC107590814 other downstream 1023183 40558684 ~ 40570148 (-)
G210995 NA other downstream 1214978 40372805 ~ 40378353 (-)
G210991 LOC103042126,LOC108416825 other downstream 1230094 40361258 ~ 40363237 (-)
G211539 NA other upstream 604513 42205136 ~ 42205636 (-)
LOC103029763 NA other upstream 681134 42281757 ~ 42361599 (-)
G211691 mrpl11 other upstream 1162578 42763201 ~ 42847764 (-)
G211912 cfl1,LOC107658066,LOC107601108,LOC107661397,LOC107560979 other upstream 1402782 43003405 ~ 43025465 (-)
LOC103021577 ubl3b,LOC108432919,LOC107658069,LOC108231135,LOC107707244,LOC106515624,LOC107092570,LOC105912149,LOC101472018 other upstream 1488399 43089022 ~ 43107011 (-)

Expression


Co-expression Network