CI01000009_15318811_15390382 (TNS1)


Basic Information

Item Value
gene id CI01000009_15318811_15390382
gene name TNS1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15318811 ~ 15390382 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_15318811_15390382.mRNA
ATGGCCATCTTCTTGCTGTACTTCTCTCTGATTGCCTTGAAATCCAGACCTGAGGAGAGAGTGAGGAGTTTGAGTTTGATCCAGGCCATGGAGGAAAACTATGAGGTGGACCTGGTCTACATCACAGAACGCATCATTTCTGTGACCTTCCCCAGTAATGTAGAAGAACCAAGCTACAGCGCTAACATAAAGGAGGTGGCCACCATGCTACGCTCTAAACATGGTGACAACTACTTGGTGCTGGATTTTGGCTGGCCAGACCATCATGCTCCAGCCCTGGATAAGATCTGCAGCATCTGCAAAGCCATGGACACTTGGATGAACACTGACAGTCACAATGTGGTTGTCTTACACAATAAGGATAGCGGTATTGTTAAGTACCTCGCTAATGAAAGGGATTTTGTCCGTGAGAATAAACGTCAGAAAGCAGCCTCTTGTGGAGTTTGTGGGTTATCTTCTAAACCACTGGTTCTCAGTGATTCGCAGGGAAACCGAGGTCGAACTGGGGTAGTTGTGGCTGCGTACATGCATTACAGCAACATATCAGCAAGTGCAGACCAGGCTCTGGACAGGTTTGCCATGAAGAGGTTTTATGAAGATAAAGTGCTTCCTGTGGGCCAGCCTTCCCAGAGAAGTACCGCCACTATCATACATGCAAATGACATATCCGTCACTACAACTGGTCTCAGTACATGCCTCTACACACACCCATTTATTCCTCATAAGGGAACACTTGGCCACGGATGTGCTGCTTTTACAGAATCAAGCATTCCATCTGTATATGGAAGCACTGGCACTTCAGGCTTCATTAAAACTAGGTTTCATTGGGGCACATACTTGTGCTCACTTCATGGAAAATGGAAAGGCAGAGTCATGATCAACAACAAGCCCCTGTTTCTGCACCACGTCATCATGCACGGGATCCCAAACTTCGAGTCCAAAGGAGGTTGCCGCCCTTTCCTCAAGATCTACCAGGCTATGCAGCCCGTCTACACATCTGGGATCTATAACGTCCAAGGAGACAGTCAGACCAGTATCTGCATCACCATTGAACCCGGCCTGCTCCTGAAAGGAGACATACTGAAAGCTTTTTGGAAGAATGACAGATTTCCTGAATATGGAAAAGTGGAATTTGTCTTTTCTTTTGGTCCAGAAAAAATCCAAGGAATGGACCACCTTGAGAACGGGCCCACTGTTTCTGTGGACTACAATACCCAAGATCCTCTGATTCGCTGGGATTCTTATGAGAACTTCAACCAGCGCTGTGAAGATTCCATGGAAGTGTCATTGAGGGTGGCTCTGACTTTCGGGGTTCGGCTTGAAAGACTGGTGGGGAGTCGGGAGGCAGCACTGAGGCCTTGTTTACCGTGGCCTCCCCATATTTGGCTAAGGCCCTGCCCACAGCATTTTTGGGATGGTTGGAGGGAGAGTGACAGAGCGAAGAGTCTCTGTTCACTGCACACACGCACGGAGCACACTGGACTATTTAACTACCGCAGAGAGGAGCAACGCTCTCTGGCGAAGAGAGGGAGGACTCGTTTACCGGCCGATCAACACTCCACCTCCTCTCCTCTTTACAAGACAAGATTGTCCCATTTCTCCTGCATTCCAGAGGCCTACGCGCATAGCTCAGTACGGAGCTCTCTGAGGACTAATGATGAAGTGTGTGATGAGGAGCTGGTGTGTGCGGTTTGTGTGCACGTTATTCACACACAAGGTCCATTGGATGGTAGTCTCTACGCTAAGGTTCGGAAGAAAGAGTCTCTGGAAGGAGGGGTCACAACTAATGGTCTCCCAGCTGCTGTCGATCATGCTTTACCTGCAGTAGACCACACTCTACCACCAGTCGACCACGCCTTGTCTGTAAGCAGTGACTCGGGCAACTCCACTGCTTCCATCAAGACTGACCGCACTGATGAAGCCAGCCATCAGCCGGCCTTGGTGAGTCAGCCATCCTCCCAGCCCCTTAGCCCAGAGGAAAAACAGGAGCTGGACCAGTTGCTCAGTGGTTTGGAAGCACCAATGCATCGGACAGGTTACCAAAGCAGCTCTGGCAGCGGAGGCGGCGGAGTCCTACACCTCGTCCCTGCCCAGGTTCATGTCAACGGACACAACAACATAGACCGAGAGACAGATATACTTGATGATGACCTGCCCAACAGCCAGGAAGGGAACAGTGTGGACAGTCTCGGAACCCTCTCATCATTTGAGGGCAGAGCCACCCCGGCAGATCTATACTACCAGTCGGAGACGGTTATTAATGGACAAGATGTGCCCTACTTGGAGAAGGGTGCCCACGAGAAAATGCCAGAGCCCAGAGTTCACAGCTCCTCATCTGTCCAGGAGCACTTGGGGGCTCCTAGTGGCTACACCAACCAGAATGGCAACATCTACCGATCTCAATCATTAGGGGCAACCCCGACCATAGAGCAGAAGTACATGCCCAAAGCTCCCACACGCACAACCAGCAGTAGGGATGCAGTGCAGAGGGGACTGAATGTGTGGCAACAATATGGTGTTCCCGAGGTCCCAGTCACAGATGGGATCACCTTCAACCCTGTACTACAATCCCACAGCCTTCCGGAGTTCCCTCCTATGGCATCTCAACAAGAAATTGAACAGTCTATTGAGGCCCTCAACATGCTGATGCTGGACCTTGACCCAGCACTTACTCAAGTCCCCAAGTCCCATAGTGCCCCATCTGGAGAAGGTGGTGTAGTCACCACACAGCCATCTTTCTCTCAAACCCAGGCACGGCCGTCCTACCAGGCTGACGCAGCCATTCATGACCGTGGTGGGACCTCTTTGGCGGGATACCCTTTGACATTTCAACAGGTAGCCGCAGAGCCTCCACAACCCACCATGAACCAGCAGAGACCCACAGCCATATCCCAGCATGCTGCATTCCCTTCTGAGGCAGAAGGTCAGGCTCCCATGTCCCAGTCCACAGTGCCTTCCTCCACCTTTGGAGTTCTCCAGTTAAAACCCCTCAACATTTACCCCTCAAGTACCACATCCCAGTCCCCTGAGCCCCAGGAGACCCAGTGTGGCTACTCTGCCTCCTCATCCCCTCTACCCAAAGAGTCTGAACCGGAAGATACCAACTACAAATTGGAGGGTCTTGTAGCTCACCGTGTAGCTGAGTACACTGCTCGTATTCAAGGCATCAGTGACAGACAGAGCGTTCCTGAGCTTGTCCCCCGTCGCCGCTCTCTCTCCTTCAGTGGTTGGTCCTCTGATGCACTGTGCCTCCCACTGACATTAACTCATAACACCTGTGCATGTTGTGTGGTTGTGTGCTATATCTCGGTTCTCTCTCGCTTCCGCCCCTTATCTTTCCCTGCTCCTGTTCACTTCAGAGTTCATTTTGGTGAAATGTCACCAGATGAGGCTTCAGTTCCTGGATGGTACAGGACTACCAGTGAGGGCCTTTCCCAAGATGAGAGCCCAACCCGAGGAGGCTCGGTCCGCTCCCCCATTCGCTGCATCTCACCCGAGCTGGCCAATACGATTGCGCTGAATCCTGGGGGACGGCCCAAGGAGAGACACATGCATAGCTACAGAGAAGCGTTTGAGGAAATGGACGGGGGTCCCGTCAGTCCCCCTCCAATCGTTGGTGGTGAGGCCCTACCCCAAACCCCCGCCTTCCCTGTCTCGCCACAAACCCCTTACTTCAACCTGAGTCGATCTCCTCCAGGACTGGCTAAAACACCTTTGTCCTTCCTGGGCCTGAAGCCCCACAATCCTGCTGAGATACTGCTCAACCAGACGGGCTCAGGTATTTTTCCCTTTGTCTCTTTGCCAGAGCCTCGTAGCTATGTGGAGTCTGTGGCCAAAGCAGCAGCCGTGACAGGTGGGCCGCCAGCATCGCCCGTGTCTCCAACATATGACAGTGACAGCTTAGCTCGTCCTGTTGGGCCTTCCCATGCCTACAACGCTCCTCTTTCCTCCAGCAGCCCCATTCAGAGCCCAGATGCAGTTGAAAACACGTTGGCCGATAGCGGGGTGGGAATGAATTCTCTGTCCCAGGCTGCTGTCGACTCCGTCCTTCACTCCCAGCCCTCTGATAGAACATACCAAACACCCACACCCTCCTATCCCTCCTCCAGCAGCATGTTGGGTAGCTACATGACCCCTGATATCAGCCCCTCTCTGCCAGGGGTCATGCAAAATAACACCACAACAATCCAGCCACTCACCGGTAGCCCTGGCACAAGACACCACACTGTCCTGCCTGACGTCACGTCCGCTCCCAACCTTCAACACAGACTAGCCAATCAGGACGGCCCCGTTCTGGGCCAACAGCCGACCCCAGCCAACGGTCATCTGCCTGGAATGGCTGGTAGTCCCATGCAAGGAAGGCACACCATGGTGTCCCAGGGAACGCAGAGCAGCCCGATGCTGTCCAGACAGTATCCCGCCACCCACGGGACTCAGAGTAGTCCAATTCTCAGCAGGCAGCCTATGGGACAAGCTGTCCAGAGCAGTCCGGTCCTCAACCGACAGGCATCCCTCAATCAACCAATCATTCTGCCTAACCAAAGCAGCCCGGTGTTGAGTAGACAACCATCTGTTACCCAGCCCAACCAGGGCAGCCCCGTCCTGAGCAGGCAATCCTCACTTACACATCCCAGTCAGGGCAGTCCCATTCTAACACAGGGTAGCCCCAGTCTGGACAGGCACCCAATGTACAGCGGCTACACCACTCCGGACGAGCGGCACGGAGCCCTGTCGCGCCAGAGCAGCTCCTCTGGATATCAGCCGCCATCCACGCCTTCTTTCCCAGTCTCTCCGGCAGGATACATAGAGGGTGTGGGATTCAGACAGGGCAGTCCTGCCCTCCAACCTCAGCTCCCCGAGAAGAGACGCATGTCCAGCAGCGATCGCTCCAATGGCGGACTGTCCTACGGAACGCTAAACGGGAAGATGTCCTCACCGGTGTCCAGTGGCGGCAGCACTCCTAGCGTTCATTTCTTCCACACGCTCCCTGATTTCTCCAAACTCAACATGTGCGATGGAAGTCCAGAGACTAGGCTGAACGTGAAGTTTGTCCAGGACACGTCCAAATTCTGGTATAAACCAGATATCTCCAGAGACCAAGCGATCAACATGCTGAAGGATCAAGAGCCTGGAGCCTTTGTCATTCGGGACAGTCATTCATTCAGAGGGGCCTACGGCTTGGCCATGAAAGTTGCCTCACCACCTCCAACAGTGCAGCCTACAAAGAAAGAAGTATCTAAGCTCCACTCCTCCAGATGCTGGACGTTTGCCAGAACGCCCACTGCTCACAGGAACAGTTCACCCGAAAAATGTCATCATCATTTGTTTATCCTTATGTCATTTGTTTCTGTGGATACAGAAGGCTGCCTGTCTGCACTGGTCTACCAGCACTCCATCACTCCACTGGCTCTACCCTGCAAACTAGTCATACCAACCAGAGATCCTCTGGAGGAATCGCCTGAGACTGCAACACCAACTAATCCGGCGACAGAGATGCTCAAACAGGGTGCAGCATGCAATGTCCTGTACATAAACTCTGTGGATATGGAGTCTCTGACTGGCCCTCAGGCCATCGCCAAGGCCATCTCAGAAACCATGACAGCCAGTCCGGTGCCCTCAGCCACCATCGTTCACTTCAAGGTGTCGGCACAAGGCATCACGCTCACTGACAACCAGAGAAAGCTTTTCTTCAGGCGCCATTATCCCATCAGCACGGTCACGTTCTGTGACATTGATCCACAGGAGAGGAAGTGGAGTAAACCAGAGGGTGGCACTGCAAA

Function

symbol description
tns1 Enables RNA binding activity. Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within cell-substrate junction assembly and fibroblast migration. Located in focal adhesion.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_15318811_15390382.mRNA False 5780 mRNA 0.53 33 15318811 15390382

Neighbor

gene id symbol gene type direction distance location
CI01000009_15301177_15304489 NA coding downstream 14311 15301097 ~ 15304500 (-)
CI01000009_15229965_15235247 NA coding downstream 83283 15229657 ~ 15235528 (-)
CI01000009_14974529_14974816 NA coding downstream 343391 14974042 ~ 14975420 (-)
CI01000009_14961220_14973307 NA coding downstream 345406 14960980 ~ 14973405 (-)
CI01000009_14905408_14907785 NA coding downstream 410734 14904489 ~ 14908077 (-)
CI01000009_15483720_15484321 NA coding upstream 93327 15483709 ~ 15484321 (-)
CI01000009_15504401_15585060 NA coding upstream 113964 15503406 ~ 15585829 (-)
CI01000009_15654061_15662554 ARPC2 coding upstream 263378 15653760 ~ 15663026 (-)
CI01000009_15693066_15694538 UGT5B4, UGT5B6 coding upstream 302612 15692994 ~ 15694629 (-)
CI01000009_15716557_15721525 KLHL23 coding upstream 326095 15716477 ~ 15721596 (-)
G60430 NA non-coding downstream 26126 15292447 ~ 15292685 (-)
G60426 NA non-coding downstream 30417 15288178 ~ 15288394 (-)
G60422 NA non-coding downstream 33831 15284744 ~ 15284980 (-)
G60418 NA non-coding downstream 43699 15274789 ~ 15275112 (-)
G60384 NA non-coding downstream 101531 15217079 ~ 15217280 (-)
G60437 NA non-coding upstream 157779 15548161 ~ 15548460 (-)
G60439 NA non-coding upstream 159200 15549582 ~ 15549879 (-)
G60442 NA non-coding upstream 199275 15589657 ~ 15649377 (-)
G59941 NA other downstream 186308 15132104 ~ 15132503 (-)
G59811 NA other downstream 431347 14862397 ~ 14887464 (-)
G59490 NA other downstream 1280938 14033564 ~ 14037873 (-)
CI01000009_13975122_13976026 NA other downstream 1340197 13975099 ~ 13978614 (-)
G59097 NA other downstream 3029293 12288217 ~ 12289518 (-)
G60370 NA non-coding downstream 55975 15311531 ~ 15320285 (-)

Expression


Co-expression Network