CI01000009_15504401_15585060


Basic Information

Item Value
gene id CI01000009_15504401_15585060
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15503406 ~ 15585829 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_15504401_15585060.mRNA
ACAGGGTGTGAATGACATACATAACCCCATCACAAATGGCACATTAAGTTGGAATGCACACTGAAAATTCCCAGCCAAGATATTCTAGCCTCTGAACCTTTAATTTTGGGGTAGTAAATGAAAACAATGGCGGGATCAGTGACGGATCAGTAACTGCATGTACTGATTAAACACGTGTTGATTATATTGCTTTGATCTCACCGCTTACAACTCTATTGACAACTAGAAAAGTAAAGTCCATAAAACAAACTGCTAGGTGGCCTTGACAAAGCATATGCTGAAAGTTAAAATAGTTTGAAAAGCCTGAAAGTTTTAACTTGAAGGTTAGTCACGATAGATAGTACCTGCGCAGTTTACAAGTTGCGCTTTACAAGAGTAGACCTGTGTTTACATTGAACGTTTCCTGCAGCTCTGGAGGTGTGTGCGCGCGGTGCGGAGTTACACATCCCAGTTTTCTAACTTTTCCCCTCACAATCCAGTCCTTCCTCTTCCTACTGCCTCACTGCGTCATTCTGAATGGGAGTTTTGCGGGCAAAAGGAACATAGTGCGCGGAGACGCCGACGCTAAAGGAATAACGCCTGTTGGATCTCTTTGCCTGAAATGCGCGCGAGGGCTCGTACCTGCTGTACTGACCTTCAGGAGGAATAGTCACGAGAACGCTCGCGTTGAATGGGTCGTAAGGACGCTCACCTGAACCTGTCTGGATGGGATGCACCGTGAGCTTCATCTGCTGTGAAGACGATTTTCTGCAGATGCCTTTGGATCAGCATGTGGGGAAAAAGAAAGAGGAAAAGAGGCTGTTATCTAAGGGAAAAGTTCACTAGTGTATGTGCACCGCTCAAAGACGTCTTACATGGGGCTCTTCTGATGGGGTGGTCTGCTCTGGGTGGTGGGGTCAGATTTGGAAGCGCCCGCTCGCAGTATTCCTGTCCGACTGCGGCAGAGAACATCAAAAGGGCCGAGCTTCTCTCCCCAACAACGCCATTCAGCCATTCCACACACGGCTGCATGGGCTTTTGTGCTATCACAGAGCGATTGTGCGGGACACAAAAGCATCTGATGGAGTTCTGGGCCTCAAGTTTTGGGTCTCAGTCCTGCTCCTACACAGGCTGTCTAATCAAAAACCAGTTAAAGATGTTGGAAGCACGTGTGGAGGCGGTAAATGACAACAATGCAGGAAACATGGAGGAGGAAAATGCTGGACAACAGCTGAAGTTACCCGCCTTCTCACCCTGTGGGGAGAACAGTCAGTTCAAGATAAAATTAAAGGCGTGTACAGAAACAAATCTGTTTTCAAGGATATTTCGTGTGTGTGTGTTTGATGGTTGCGTCACAGCCCCAGAAAAGCAACACGCTTGCAGCCTCACTGATATCTGGGGCAGAGACATGATCCAGAGGAGAGGAAGCCGTCAGCGTGATCTCGTGATGCCCTCCGTGTCTCTCAACTTGCCAGCCGCACTGGCCGGCCGCGCACGCACCTGGGTCTGCCTGTCCTGCATGTTCTGGGTGAGCCGTGGGTCAGCCCACTTGACTGGGGCAGCATTCCACTTTAGTGAATGGAGTGGAAAAGGATCCCAAATCCTCCTAAAGCTCAGGCACTTTTTGAATATAGTGGGAGCCTTTCAGTCTTGCTTTCAGACTGTGATTGTGCAGTCCTGCTGCACTGGCACTGGTGGAATGGGCTTTCCAGGGACGAGGACTCTGTCTACAGCTGTAGATGTCATCATATGCGGCGAGAAGATGCGGGAAACAGGCGTTCGGAATGAAGCAGATGTGATTTATTTGCTAGCAGCATCCAAAACGAAATCCCTGGGCCCAAACTCTATACTCGGCATGGAAAATGTTATGTACGGCTCTTGCGTAAAGACCTCTGAGACAAGGTGTTACTTACACATGCTCTCTGCCACTCAGCCAATGCAAATATTGACGCATCTTGAGCTGTCTGAGAGCTATATTGCACAGTCCTTGTGTGACATTGTACCGGAGCACCGTTTGGAAAAAGAATCTCATCTGTCAGAGATAAAAGTCTTACTGCATGTTCTAAAGCCTTACAGATTTGATGGCTTGACGGCCTGCTCCCTCCTGGTTCAAAGCTTTATCAGTAAATGGACGGTCCGTAGGCTGTACAAACTCATTAATGTCTTGGCTGCATTTCTAGAGGGGGAGTCATGTGGTTTTCATCATGTCAAACTTTACTTGATTATTCTTCATTGGCGTTCTTGTTTTGTCTCAGTAGGGGGCATTATTTGATGTGAGTTCATTTTGCAGGTTATAAGCAATACTCAACCAGAGCATCTCAAATAAA
>TU68731
GGAGGGAGGGCTCCTGGAATAAGAGAGTGGCGAGGAGGACAGCAGCGTCAGTTGATGCAGCTCTCCTCAGTGTGTCATGGATCTGTGGAGTGTTGTGGGACCAGCGTGTGGAATAGTTATGTGTCCTGTCCAGGATCCAGAGGAGAGGAAGCCGTCAGCGTGATCTCGTGATGCCCTCCGTGTCTCTCAACTTGCCAGCCGCACTGGCCGGCCGCGCACGCACCTGGGTCTGCCTGTCCTGCATGTTCTGGGTGAGCCGTGGGTCAGCCCACTTGACTGGGGCAGGTGGGATTGGGGGAGAGATAATTTTCCTGGATAATTTGATGAATTAGATCAGTGCTGGAGTAAAGGGCTGCTTGTTTCATTGTGCATGTCACATTTTAAGTGTCTTTCACTGGATGTATTTTCTGGACGTTCACTAGCCTGTTGCTCAATGTTGTGTTTTTAAGAAAAGATTTGCCCACAAAGTGAACATTTTGTCATCATTTGTTCACCTCTTTGAAATTCCAAATCATGCCAGAATGGATGTGGAAGAATGTCCAAGCTGCTCTTTTCCATGCACTGACAGTGGATTCACACCTCTGAGCTCCAGAAGTGACTGTAAATGTCATTATTTTAAAGGTCTTCAGTGATTATCTCACTCTGAGACATGGATAAGATCTCTGTTTTAGAGAAGAGTGAGATTAAATGGAGCAAAGTGACGAGAGATATATGATACCAAGATACCAAAATCTGAAATTTTAATATGAACTCAAATATTTCTCATCCAATTTTCATATTGAGTTTATATCTCTATACTTCATTTAAATGTGAGAAGCAGATGACTTCATCAAAATTCTGTATTTGCTCTTCATCATTTAACCTTGTTGTATAGGAGAAGAAATTGAGTAATTAAAGTTGTGACGTTTCTTTCTTCGGGATCCAGAGGAACATTTTTATTCTCAGAGATTGTTCATTCATAGATCAGGTAATTTGGTTTTGGAAAATTTTGTTGAGAAAAAGTTTATATTCAAAGTCCATTTACTCTCTTTCTAAGATTTTTTAAAGGCGACCTATAATGCCCCTTTTACAAGATGTAATATCTTGTAGTCTCTTGTGTCCCCAGAATGTGTCTGTGCGGTTTCAGCTCAAAATACCCCACAGATCATTTATTATAGCGTCAAATTTGCCCCAATTTGGGTGTGAGCAAAAACACACCATTTTTGGTGTGTGTCCCTTTAAATGCAAATGAGCTGCTGTTCCCGGCCCCCTTTCCAGAAGAGGGCGGAGCTTTAACAGCTCACGCTTCAGTTGCTCAACAACAACAAAGCTGGAGAATCTCACACAGCCAAAATGAGGATTGTCAGTAACGGTGTTCAGCCTTACATTGTTCAAACCGGAGTCGGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGAATGAAACTGGACGTTTCTGAATGATTAGTGGATAAATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATCGACTAGCATGTGCCGTCATATTAATCTTTTGTACAAATCCAGCGTTGAATTGACCCTCGTTTGTGAAGCAGTCCAGCGTAAAATGACGGCATGACAACAACACTCTACTACAACAACTCTTCCTCTTCTCTAAAGCAGCCCAACATGGCCTCACCCCCTTTGTTGCGTGTTCTCGGGGGCGGAGTTTATGTAAATTTTAGGGTTTGTGATGTCACCAACCCGGGAAGAAGCTCATTGTAGTCCCTACCAGCTGTTTGTTGTTTTCCTTAAAAAGCGATTTCTTTAAAAGAAAATATCTCCCTTTGCATTGAACTTTGAGCGTCGTAACTTTGCAGATGTTGTTTATGCTCAAACAGCAACATTACACACTAACTAAAATTAAAAAATGAAATCATAATCAAGGACCCCCTTAAACTCAAATATTTCTCATCCAATTCTCATATTCTCGTTTGTGTCCATTTTTATGTCTCCTAAAACTTTCATGATTGTTGTCCTTTTTGGAGCTTGATGGAATAAATTACCATCTACTTTCATTGTATGGAAAAGAGCAGCTCGGACATTCCAATTGGTCAGTAAACGATGACAACCCTGTCATTTTTAGGTGAACTATTCCTTTAACTGTCACTTGGGCAATGGTTGTGTCCCCTCCTCTTTCTCTTTGGACATTCACACAATCTGACCTCTCTGGTCTCTTAATTAGCATTCCACTTTAGTGAATGGAGTGGAAAAGGATCCCAAATCCTCCTAAAGCTCAGGCACTTTTTGAATATAGTGGGAGCCTTTCAGTCTTGCTTTCAGACTGTGATTGTGCAGTCCTGCTGCACTGGCACTGGTGGAATGGGCTTTCCAGGGACGAGGACTCTGTCTACAGCTGTAGATGTCATCATATGCGGCGAGAAGATGCGGGAAACAGGCGTTCGGAATGAAGCAGATGTGATTTATTTGCTAGCAGCATCCAAAACGAAATCCCTGGGCCCAAACTCTATACTCGGCATGGTTTGATTACCTGCTGAGGAGAGATGACATTGTGAATGGAAAGAGACATGTACTTCTCTGAAAAGAAGCCTGTCCTGATGTCAGCAGAGGAAAAAAAGCAGAAAAAGAACGGGCAACATCCAATACCTAAAAGCTCAGAATGCACTTCCTCCAAACTCTGAATTATAAATGACCTGTCTGAGACTTTTAGGACCAGCCGGGATGGACAGTCTCTTGTTCGTAAATTTCTCTGAAAGCATGTTGAAATTAAGGTATTGAAGGTTTGATCGCAAGCAAAAGATATGGGTAACACTTTACAATAAGATTAAATATGTTAACATACATTAGGTATCATGACCTTACAATGAACATTTTTATAGCATTTATTAGTTAATTTATATTTACTTATTATATTAACCTAAAAATATTAATAAAGAATTGATTAAAGTTTATTTGATTTAAAAACATACTTTTGTTCATAATACATTAATGTTAATTTATATAACTTTTATGTAAAAATTAGCATGCATTAACTAATGAAACAAATGTATTCTTAAAGATATTACAGTCAATGCTAAGAGCCATTCGCAGCCCATTTTACTTCTGTAATATAATGTATTTCCAACTGAAATTGGATATTTAGTAAGAAAAAGATGTTGGGCGAGACGTGATTTTATCCATTGGTAATTGATTGGATCCAATCAAAGTAGGCATTAAAGTATCCAATCAAAGTAGGCATTACCAAAATGGTATCAGGTTTTCCGATGGAAGGCTGAGAAGGAAAGTTGTTGCAGAGGCAGAGAAAGCTAGTGAAAGACTCATTATTTGGAATAACGCACTGATGAATCGGGCAAAATATGAACAGGAATGTTTATAAAATTGGTAAAAAGTGTGAATTTTTATTTAATTTTAAACTGTGCTAAGGTTGGATGAACATGGGCTTTTGTCTAGGACATTAAACCCTTAATGTTTTGCACTCAGGAAAATGTTATGTACGGCTCTTGCGTAAAGACCTCTGAGACAAGGTGTTACTTACACATGCTCTCTGCCACTCAGCCAATGCAAATATTGACGCATCTTGAGCTGTCTGAGAGGTCAAAGTGCTTAGTGCAGTGATCAATGTCCATTAACACTCCAGATCAATCAACAGCAAACAAGTTGCCCTGTACAGTGTGGAAGTGGCTGCGGTGCCCAATCTGCAACAATTCTGCATATTCTCACTGAAGGTGGTATTTTATTTTATTTAACATAAATTTAATTTTAATTTTATTAATTAATACTGATTTGCATATTCTTCGCACCAGCACAAGATAAATATTTAAAAAAATTAATTATCGATTTATAAAATAAAGATTCGGGTAAATATTCATTCCTCTCTGTGCATTACAGTCGTCTCTAGTAGGTCACCTTTGATTTTGTCGGACTAATGAGTCTGTGGTCTTTGAAGTCACTCGGTGTATGATTTACTCTTGCACTTCTCATCATTGTTGGCTTTTGAATTCCACTTTAATGACCTCATGCTCTACAAGCTCTTCATCCTTCTATCAAAGCTGCCTGTGAGGGGCCCCTATAATTTTGGCAAATTCAAAATTAGAACATCTGGTTTGCCTTCATAATGGATCAGACACAGTTCTTCATGTACTTCTAGGCACGTGTCTGCGAGAGGTTGTGCATGTTTTCTGGGGTTTTGTGTGCATTAGAGTTGAGCAATAGAGTGAATACTGTGTAGTATGTGTGTATAATAGTGATAATTTTATAGGTAAAGCATAATTATGCAACACTGACTGTCATTAGAATATTAGACTATTTCTCAGTTCTTCAGTATTTTGCAAGAGAATATAGAAGTAAAAAAAAAAAAAAAACTGCTGTTGGTTAGGGAATCGGTTCAGTTGAATCAATTGAATCAGTTCAGAGAATCATTTCAAAACTCTGATTCAACAATTAGTTTCATTTATCACACTAAAATGCAGGTGTCTGTGTGTCATTTTTCATTTATTAAAATGTTTTAGTAAAAATATATTTAGATAAAATAGATGTTAATTTCTATGTATGTTTTTATTGGTGCATATTATTTATTTATACTTTATATTATATTTATATATAATCACTCTTGTGTTTATTAAGTGACAAACTGTCTGGAAAGCATGCTTTATTTTTAACTTAATTTTTGCTGTGTTTTTGCTCTAAACATTATAAATTCACTTAGGAATGAGTAGTTCTTCCTAAATCTCCATTTTAAGACATTTCAGAGCAAATTCTTAAATATTAAAATGTTAAGAATATTTAAATAGTTTCAGAAACATATTGAGAGGTATATCAAATTTTGTCAGAAGGCTGAAAAATATTCAAACTGCTGTATCTTTGTAGCTATATTGCACAGTCCTTGTGTGACATTGTACCGGAGCACCGTTTGGAAAAAGAATCTGTAAGTGACAGTCTGGAGGGACTTGTCCCCCTTCCCTCTGAGTACATTAAAAGCCGTTTAACCTTCTCTGTTGATTTATGATGCGAGTCTGACTCCAACCCGTGTTCACTTCACCAGGCAGAGCTGCCCGTTAATCCATTGCTGTCAATGGAGCTGGATTCTGAAATATCTCCTGATCACCTACCCTAGTTTTCTTATTAATATCTCACTTTTCCCTGTTATTCTGTCATCCTCTCTGATTTTTCCCATGTGTCTCTTTCTTCCTTTCCCTTAATCCTTAGTCTTGCTGAGTTGCCAGTTTTGATTCTTCTTCTTCTTTTTCAGCATCTGTCAGAGATAAAAGTCTTACTGCATGTTCTAAAGCCTTACAGATTTGATGGCTTGACGGCCTGCTCCCTCCTGGTTCAAAGCTTTATCAGTAAATGGACGGTCCGTAGGCTGTACGTAGGTTTGTCATCTGAGAGGCACACATTTGCTAGCTGAGGAGCTGTAGTAAGGCACAGGATGCATCTAATGCCTCTTAGGCTTTTTTTGTAATTCATCAGAAACTCATTAATGTCTTGGCTGCATTTCTAGAGGGGGAGTCATGTGGTTTTCATCATGTCAAACTTTACTTGATTATTCTTCATTGGCGTTCTTGTTTTGTCTCAGTAGGGGGCATTATTTGATGTGAGTTCATTTTGCAGGTTATAAGCAATACTCAACCAGAGCATCTCAAATAAACAGGGCTGTTCCTTAGTCTTTGTAAGCGGAACCAAATGTCTGGCAGTTTTGAAGGAAATTTTCTCATTTTTCACTGCTCTGCCCACTCAGACCATCGTAATGAAGAAACACTGTATGCTGTCAAATATGAGAGAGAATCCCTTCATTCAATAATCACTTAGTAAGTAATTTTGCTATTTGTGAGCACATCATGGGTAGCAAGTCATGGCAATTTGTTCTGAAATCAGTTTGAAATAAATATAAATATATATATATATATTATATTAATATATATCAATAGCATAGCCACGAGGGGGGCCTAGGCCCCCTCATTTACATGTCACAAAATATTAAGGAATTGTTGATTTATTGTTCTTATTGTTAGATTGACCAATGCTGCATGGTAAAATGCAACGGCCTATGCTGTCATTTTCATTAACATGCGGTGACAATGGTGGATGCACAAAGTTTAATATTACGCTTTTTCCGGAAATCACAGAAAGATTAAAGGAGAAAAAGTGCACATTTTATCATGATCCATTATCTCTGGAATGTAGTAGTGAGAATTCCCTGAAACAAATTGGCACAATGCCCAATGATTTTGTCTCATTATAACAGCGGAAATGACTTAAAATACTCCACCATTTGTGGTCATACAGATAAGAGTAAGACATCATTCGAAACTCTTCTTAAGGGCCTATTCGTATATATATATATATATATATTTTTTTTTTTTTTTCTCCATTCACAGATATATATAGCCTATATACTATATACTGCTTTTTGCCCTGTCTTTGCACACTGTTGTATCTGAGCTTGTTTCTTTACTCAGTAAACAAGAGTTTGCATATCTGAAAATGCATACCCTACAGTAGTTCTCCCTCTGTCCTTCATCATTGTACTTGACTGTAGCAGTGTGGTGTTCTTCTTGTCGGTTGAATGAACCGCAGGACTAAGTGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_15504401_15585060.mRNA False 2306 mRNA 0.48 12 15504346 15585829
TU68731 True 6560 lncRNA 0.38 2 15503406 15510352

Neighbor

gene id symbol gene type direction distance location
CI01000009_15483720_15484321 NA coding downstream 20025 15483709 ~ 15484321 (-)
CI01000009_15318811_15390382 TNS1 coding downstream 113964 15318811 ~ 15390382 (-)
CI01000009_15301177_15304489 NA coding downstream 199846 15301097 ~ 15304500 (-)
CI01000009_15229965_15235247 NA coding downstream 268818 15229657 ~ 15235528 (-)
CI01000009_14974529_14974816 NA coding downstream 528926 14974042 ~ 14975420 (-)
CI01000009_15654061_15662554 ARPC2 coding upstream 67931 15653760 ~ 15663026 (-)
CI01000009_15693066_15694538 UGT5B4, UGT5B6 coding upstream 107165 15692994 ~ 15694629 (-)
CI01000009_15716557_15721525 KLHL23 coding upstream 130648 15716477 ~ 15721596 (-)
CI01000009_15726357_15736168 PHGDH coding upstream 140316 15726145 ~ 15736168 (-)
CI01000009_15784118_15789896 KLHL41, KLHL41A coding upstream 198251 15784080 ~ 15789896 (-)
G60370 NA non-coding downstream 184061 15311531 ~ 15320285 (-)
G60430 NA non-coding downstream 211661 15292447 ~ 15292685 (-)
G60426 NA non-coding downstream 215952 15288178 ~ 15288394 (-)
G60422 NA non-coding downstream 219366 15284744 ~ 15284980 (-)
G60418 NA non-coding downstream 229234 15274789 ~ 15275112 (-)
G60442 NA non-coding upstream 3828 15589657 ~ 15649377 (-)
G60468 NA non-coding upstream 122175 15708004 ~ 15712147 (-)
G60469 NA non-coding upstream 132733 15718562 ~ 15719161 (-)
G60376 NA non-coding upstream 159639 15745468 ~ 15746486 (-)
G59941 NA other downstream 371843 15132104 ~ 15132503 (-)
G59811 NA other downstream 616882 14862397 ~ 14887464 (-)
G59490 NA other downstream 1466473 14033564 ~ 14037873 (-)
CI01000009_13975122_13976026 NA other downstream 1525732 13975099 ~ 13978614 (-)
G60437 NA non-coding upstream 37809 15548161 ~ 15548460 (-)
G60439 NA non-coding upstream 39230 15549582 ~ 15549879 (-)

Expression


Co-expression Network