CI01000009_15654061_15662554 (ARPC2)


Basic Information

Item Value
gene id CI01000009_15654061_15662554
gene name ARPC2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15653760 ~ 15663026 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_15654061_15662554.mRNA
ATATTGTTGCGAAAGATATTTCATTTTCAGTTTTCTTGAATGCGATTACAGCAGTAGTTTTTCAGTAACTGGACAGTATAGCTAAAGTAGGCTATTTGTATGAATAGGCCTATCAATACCTATGCACACTCAAAACCTGGAATGCACCAAAACAGGGTGATTTCAATAAACTAGTAAATGTAAATCCTATAATATATCTAAAATATTTCAGAAAGAATAAATAAAGAAGTATCCCTCTTTGTAAGTGCAATGTTTATAAACTCCTTATTTAGTTTTAGTGTTTTGTTTAAATGACTAGCACAAACGAACAGGCAGTGACGCGGGCAGCCCGCGGGTCTTTCGAGTCAATGCGGAAGCGGCCGGAAGTCTAGGAGCAGGAAAACCAAAACGATTGTAGTAGGATTGTAGAAAAGCAACATTTGCTCTTATATTTTTAATTCCACATAGCCATTAAACATTCATTTAAATCATCATGATTTTGTTGGAAATCAACAATCGGATCATAGAGGAGACTCTCAGCCTCAAATTCGACAGCGCGAGCAACGGGTATATTGAGGCAAAGAAAGACCGAGTAACTGTTGTGTTCAGCACAGTCTTCAAGGATGACGACGATGTCATCATCGGGAAAGTGTTCATGCAGGAGTTTAAGGAGGGCAGGAGGGCCAGTCACACGGCTCCTCAAGTGCTGTTCAGTCACAGAGAACCTCCTCTGGAGCTGAAGGACACTGACGCCACAGTGGGAGACAACATCGGCTACATCACTTTTGGTTTGTACCATGAGGTCACATACACGTAAACATAAATTTAGTGTCTCAGAATAATAAGAATGGTTATTTTTCCTCACAAATGACACTTGGAGAGTGTTCATTTTAGACATTGGTTGAACACTATCATCAACCACATCTGCTAGTTTGAACAAAGTTAAATATAGACTTTTGTCAGGTTTACTTTGGTGATGACTTGTATGTTAATACGAGGCCAGAACAAAGCACTGCTGCTTACCTGTGACAGGTGCGCTGTGTATTTGCATTTGGTTCAAGAGAGCAAACACCCAGCCTCTCTTCATGGCGGTTACACAAACCTCTTAATGAATTAAA
>TU68712
CGGGTCTTTCGAGTCAATGCGGAAGCGGCCGGAAGTCTAGGAGCAGGAAAACCAAAACGATTGTAGTAGGATTGTAGAAAAGCAACATTTGCTCTTATATTTTTAATTCCACATAGCCATTAAACATTCATTTAAATCATCATGATTTTGTTGGAAATCAACAATCGGATCATAGAGGAGACTCTCAGCCTCAAATTCGACAGCGCGAGCAACGGGTAAGAGGAAGATCTTCCTGTCTGAGTCAGAACTCACATCAAACATCGGTCATTTAATGCATGT

Function

symbol description
arpc2 Predicted to enable actin filament binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within actin filament polymerization and regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton; cell projection; and cytoplasm. Predicted to be part of Arp2/3 protein complex. Orthologous to human ARPC2 (actin related protein 2/3 complex subunit 2).

GO: NA

KEGG:

id description
K05758 ARPC2; actin related protein 2/3 complex, subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_15654061_15662554.mRNA False 1097 mRNA 0.40 3 15653760 15663026
TU68712 True 279 lncRNA 0.41 1 15662417 15662695

Neighbor

gene id symbol gene type direction distance location
CI01000009_15504401_15585060 NA coding downstream 67931 15503406 ~ 15585829 (-)
CI01000009_15483720_15484321 NA coding downstream 169439 15483709 ~ 15484321 (-)
CI01000009_15318811_15390382 TNS1 coding downstream 263378 15318811 ~ 15390382 (-)
CI01000009_15301177_15304489 NA coding downstream 349260 15301097 ~ 15304500 (-)
CI01000009_15229965_15235247 NA coding downstream 418232 15229657 ~ 15235528 (-)
CI01000009_15693066_15694538 UGT5B4, UGT5B6 coding upstream 29968 15692994 ~ 15694629 (-)
CI01000009_15716557_15721525 KLHL23 coding upstream 53451 15716477 ~ 15721596 (-)
CI01000009_15726357_15736168 PHGDH coding upstream 63119 15726145 ~ 15736168 (-)
CI01000009_15784118_15789896 KLHL41, KLHL41A coding upstream 121054 15784080 ~ 15789896 (-)
CI01000009_15791178_15798430 BBS5.L, BBS5 coding upstream 127823 15790849 ~ 15798430 (-)
G60442 NA non-coding downstream 4383 15589657 ~ 15649377 (-)
G60439 NA non-coding downstream 103881 15549582 ~ 15549879 (-)
G60437 NA non-coding downstream 105300 15548161 ~ 15548460 (-)
G60370 NA non-coding downstream 333475 15311531 ~ 15320285 (-)
G60468 NA non-coding upstream 44978 15708004 ~ 15712147 (-)
G60469 NA non-coding upstream 55536 15718562 ~ 15719161 (-)
G60376 NA non-coding upstream 82442 15745468 ~ 15746486 (-)
G60472 NA non-coding upstream 87672 15750698 ~ 15750994 (-)
G60367 NA non-coding upstream 118273 15781299 ~ 15798959 (-)
G59941 NA other downstream 521257 15132104 ~ 15132503 (-)
G59811 NA other downstream 766296 14862397 ~ 14887464 (-)
G59490 NA other downstream 1615887 14033564 ~ 14037873 (-)
CI01000009_13975122_13976026 NA other downstream 1675146 13975099 ~ 13978614 (-)
CI01000009_15654061_15662554 ARPC2 other downstream 6448 15653760 ~ 15663026 (-)
G60430 NA non-coding downstream 354090 15292447 ~ 15292685 (-)

Expression


Co-expression Network