CI01000009_15680573_15681601


Basic Information

Item Value
gene id CI01000009_15680573_15681601
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15680573 ~ 15681976 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_15680573_15681601.mRNA
ATGGAAGTTACTACAGATTACATGTACCCTGAATTAATAACTCCCTGCCCGAACACTACGCAGCATCTGAACGGCACGGTTTTGGTCCTAGTCTACATCATAGTCTTCTGTCTGAGCTTGCTGGGTAACACTGTGGTGATATTCGTGGTGTATTTCATGGAGAACCGCAGGACGTCTACTGACGTTTACCTCATGCACCTGGCCATAGCCGACCTGCTCTTTTCTTTGACCCTTCCGTTCTGGGCCAGCTACATTCACGCCGGCCGCTGGATATTTGGCACCGTTATGTGCAAGCTGCTATCAGGCATGCAGGAAGCCACATTTTACTGCTGTGTCTTCCTGCTGGCATGCATTAGCGTTGATCGCTACATGGCCATCGTGAAAGCAACCCAATTCCTCAACCAGAAACGCCATCTGGTTGGCATAGTGTGTGCGTTGGTGTGGCTGTGCGCCTTTCTTTTGTCCATTCCCGTTATTGTGAATCGCGATGCCTTCACACCCGAAGGCATGGAGTATGCCATGACATGTCATGACAATGTAACAGCGGAAAACATGGACAACTGGAGGGTGAGCCTACGGATTCTCCGCCACACTTTGGGATTCTTCATACCGCTCGCCGTGATGTTGTTCTGCTATGGTTTCACCGTGTGTAAGCTCTGCCACTCGCGCAACAGCCAAAAGCAGAAGGCCATGCGGGTCATCTTGTGCGTCGTTCTGGCTTTTGTCATCTGCTGGTTGCCCAATAACATCACAGAGTTCATAGACAACCTGATGCGAGCCGGTGGAGTGATGGAAACGTGCCAGATGAGGGACAGGATAGATGTGGCCTTGTATGTCACGCAGGCGATGGCTTTCACCCACTGTGCGATAAACCCCATCTTGTATGCCTTTATTGGGAAGAAATTCCGCAACCAGCTCCTGACTTCCCTCTTTAAGAAAGGCCTGTTAGGGAGAGATGTGATGTCAAGATATCGAGTGGGATCTGTTTATAGCTCTGTTAGCTCTAGGCACACGTCAGTGACGCTGTAGTCAACTGTAGTTCTCTTATGAGGATACAAAAGCCTTTTGCTTCTGTTAAAGAAATAGTTTAGACACAAATGCAAATTTGGTCATTATTTTCTTATCCTTCATGAACCTGCTGTACTGTTTTAAAAAGCAGAATTTAGTTTATATAGAAGTAATTTTCTTAAAGAAACAGTGCACTCAAAAATGGGCCTGTTAGGGAGAGACGTGATGTCGAAATATCTAGTGGGATCTGTTTATAGCTCCGGGAGCACTAGGCACACGTCAGTGACGCTGTAGTCAACTGTAGTTCTCTTATGAGGGTACAAAAGCCTTTTGCTTCTGTTAAAGAAATAGTTTAGACACAAATGCAAATTTAGTCATTATTTACTTATCCTTGTT

Function

NR:

description
CXC chemokine receptor-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_15680573_15681601.mRNA True 1404 mRNA 0.46 1 15680573 15681976

Neighbor

gene id symbol gene type direction distance location
CI01000009_15667251_15668333 NA coding upstream 11123 15667251 ~ 15669450 (+)
CI01000009_15637754_15643935 NA coding upstream 36638 15637650 ~ 15643935 (+)
CI01000009_15625341_15626360 GPBAR1 coding upstream 54170 15625159 ~ 15626403 (+)
CI01000009_15610515_15613753 NA coding upstream 66820 15610032 ~ 15613753 (+)
CI01000009_15415868_15427139 NA coding upstream 253375 15413174 ~ 15427198 (+)
CI01000009_15708273_15712002 METTL5 coding downstream 24484 15706460 ~ 15712005 (+)
CI01000009_15738136_15745816 CCDC173 coding downstream 56096 15738072 ~ 15745866 (+)
CI01000009_15770057_15782295 FASTKD1 coding downstream 88081 15770057 ~ 15783049 (+)
CI01000009_15872202_15973125 LRP2, LRP2A coding downstream 190226 15872202 ~ 15973231 (+)
CI01000009_15992272_16002225 ABCB11, ABCB11A coding downstream 310296 15992272 ~ 16002225 (+)
G60213 NA non-coding upstream 17878 15662473 ~ 15662695 (+)
G60222 NA non-coding upstream 123672 15556519 ~ 15556901 (+)
G60221 NA non-coding upstream 124740 15555606 ~ 15555833 (+)
G60220 NA non-coding upstream 125162 15555133 ~ 15555411 (+)
G60219 NA non-coding upstream 125877 15554354 ~ 15554696 (+)
G60286 NA non-coding downstream 15803 15697779 ~ 15698147 (+)
G60293 NA non-coding downstream 66544 15748520 ~ 15749113 (+)
G60303 NA non-coding downstream 117705 15799681 ~ 15801256 (+)
G60028 NA other upstream 304404 15352047 ~ 15376169 (+)
CI01000009_14925314_14952223 NA other upstream 724778 14924621 ~ 14952571 (+)
CI01000009_14857765_14859526 NA other upstream 821929 14857713 ~ 14859636 (+)
G58711 NA other upstream 906800 14766659 ~ 14773773 (+)
G58649 NA other upstream 1028551 14649724 ~ 14652022 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037421 cxcr2 coding NC_007120.7 CM002893.2 48108174 ~ 48109197 (+)