CI01000009_15738136_15745816 (CCDC173)


Basic Information

Item Value
gene id CI01000009_15738136_15745816
gene name CCDC173
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15738072 ~ 15745866 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_15738136_15745816.mRNA
ATATAAAAACACCTCAATATACGTTTAGATCAACGAATGTGAGAGGAAATAAAAAGCAGTTCAAATGTCAGCAGCCTCAGTAACAACAGGTGTCGTCCAGTACGGTCGGAGGAAAGGCTCGAGTAAACAAGTTGTGAGTTCAGAGATGGAGAAAACCGAAGCAGACCTTCGTCAAGTGGTAGTTTTGTCCAAATCTGAATGGCAGCGCGTACAGGACAGTGTGAACGGTGTGAATCGTTACAACAGAAGTGTCATTGCGGCAGCTGAACAGCGGGAGGCGCTGCACATGCGCTCTAAAGAGCTCGTGAAACACTGGTCCAACACCATTGCTGGACAGCGACAAAAAAAGCTAGAAGCGAAAAAAATTCGAGAGGCGATCGAAGAGGAGGAGAGGAAACTACTTGACATAGAAGAAGCGAAATACCAGGCCGAGATACGAAAGGAGGCCATTGAAAAAGCAAAAACCCAGCAGTACTACCAGACCGACAGAAGCGCTCTGTTGCTGGCGGAGGTTCTGAAGGAAAGGGAGGCTCAGATCGAGCTAAAACACATGAAGCAGAATGTCAGCAAAGATGTAGACAGAGAAATCTTGGCCGAAATGGCTAGCAGAGAAGAACAGGCCATCCAGCAGGAGCAGCAGAAAGCCCTGCAGAGGAAACAAGACCAACTCGCCATGGCTGAGAGCTTGAAACTACAGTTTAAGGATCATGAAATGAGGAAAGAGCAGGAGAGGCAGGAGGTCAAAAGGGAGGCTGAAGAAATCGAGCGACTCAGAGATCTTAATCTGTGGGAACAGTCCATGAAAGAGCGCAAGAATCAAGAAGAGAAGAGAAGCATGATGAAGGCTCTTCGTGACCATTTGACCAACAGAGAGCTGGTGAAAGCAGCAGAGGCCCAGAGGCAGGAGGAAGAAGAGGAGAAACGGAAGCAGCTCGCCAGCCATAAAGAAAAAGTGACGAAAATGAGGAAAGCAAAGCAGGAGGAAATATTTAGAGAGCTTCAAAGACACAGAGAGACTATTATACAGAAGTTAGCTGTACAAAAGCAGCAAGAAATCAGCAATGAGGAAGAGATCATCGCAAAAGCGGTCGCTGAACGTGAGGCCAGACAGGCCCGAGAGCAGCGTGAGAAAGAAGAGCAGCATGCAGCCATGTTGAAATCTATCGCTGCACACAGAGAATCCATGAGGCAAGAGCAGGAACGACAGGCAGAGGAAGAAAAACAGAAAGCTCTGGAGATGCTAAATGCAAAGAAGGAAGCAGATAAAATCTTCATGGAAAAGCAGGAACTTCAAGCTCAAAAAGCTAAAGAAGAAGGAAAAGCACTGCAAGACATCTACATACAAGAAATGGCTGAAAAACGCGCAAAGGATCAACGTACGAAAAAAGAACAGAAGGACTTTGTGGAGAGGAACACCGCTCTCATTGTTGAGGAGGAAAACCAGTTCCAGAAATACGCCAAACAAGTCATCGAAACAGCCGAGAAGGGAGGGAGAAACATCTACCCACTCCTGAAGGCTGGCAGAGAGGGCATCGGAGGGGGCCTGGGGCCCATGTTCAGTGGACTTAGACCAAGTTATCTAGTCCACGATGAGTCGGGTGTTCAGATGCCCAATTATGTGAGCGGCACCACTCAAAACATAAAAGAGCTGAACGAGACCTCTGATATCCAGAAGTCCAAGAAAAGACTAGGATTTACCTGGTAATACTTTACAACATCTTGTTGTTAGAATGACTCTCTCTTGCTGTTGCGATA

Function

symbol description
ccdc173 Orthologous to human CCDC173 (coiled-coil domain containing 173).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_15738136_15745816.mRNA True 1755 mRNA 0.47 9 15738072 15745866

Neighbor

gene id symbol gene type direction distance location
CI01000009_15708273_15712002 METTL5 coding upstream 26070 15706460 ~ 15712005 (+)
CI01000009_15680573_15681601 NA coding upstream 56096 15680573 ~ 15681976 (+)
CI01000009_15667251_15668333 NA coding upstream 68622 15667251 ~ 15669450 (+)
CI01000009_15637754_15643935 NA coding upstream 94137 15637650 ~ 15643935 (+)
CI01000009_15625341_15626360 GPBAR1 coding upstream 111669 15625159 ~ 15626403 (+)
CI01000009_15770057_15782295 FASTKD1 coding downstream 24191 15770057 ~ 15783049 (+)
CI01000009_15872202_15973125 LRP2, LRP2A coding downstream 126336 15872202 ~ 15973231 (+)
CI01000009_15992272_16002225 ABCB11, ABCB11A coding downstream 246406 15992272 ~ 16002225 (+)
G60286 NA non-coding upstream 39925 15697779 ~ 15698147 (+)
G60280 NA non-coding upstream 43481 15677482 ~ 15694591 (+)
G60213 NA non-coding upstream 75377 15662473 ~ 15662695 (+)
G60222 NA non-coding upstream 181171 15556519 ~ 15556901 (+)
G60221 NA non-coding upstream 182239 15555606 ~ 15555833 (+)
G60293 NA non-coding downstream 2654 15748520 ~ 15749113 (+)
G60303 NA non-coding downstream 53815 15799681 ~ 15801256 (+)
G60028 NA other upstream 361903 15352047 ~ 15376169 (+)
CI01000009_14925314_14952223 NA other upstream 782277 14924621 ~ 14952571 (+)
CI01000009_14857765_14859526 NA other upstream 879428 14857713 ~ 14859636 (+)
G58711 NA other upstream 964299 14766659 ~ 14773773 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location