c24h12orf4 (cunh12orf4,c8h12orf4,LOC107707474,LOC107700900,LOC107732788)


Basic Information

Item Value
gene id c24h12orf4
gene name cunh12orf4,c8h12orf4,LOC107707474,LOC107700900,LOC107732788
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 22460046 ~ 22477263 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228357.3
tgtcgTTTTTGTCGAAACTGCAACTACGAATAAGGAAATAGGCGCTCTGATAGCCGGCTGGAACAGCTGACAGAGTCATCATACAGCGgtgaaaatgaggaaaaacaaagtgaaaacGAACACAACTGAGAAAGAGTTTGTGTTTGAGTACAAGGCAGGCAGACACCACTGTGTTCTCAAAGTGCCCCTTCAGTTTCCTGTTCAAGAAAATGTCAGTGATCTTCATGGGAGGCTCATGCTGCTTCACAAAATCCCCTGCTTCGTAGAGACAGAATTAAAAGACAGACTTCTGGCCTTCATTGAGAGAGAAACATTAGAAGATTATGACCGGGAAGCTGAAGCAGCTCTACAGAAGCTTACTAATGGAGAGGCTGACCTCAATAAACTCACCAACTTGTGGGCCAAAGCATATACTGAGACTACATTGGAACATGCCTGTCCAGAGGAGCCCAGCTGGGATGAGGATTTCGCAGATGTTTACCATGAGCTGATCCACTCTCCGGCCTCTGAAACGCTGCTCAACCTGGAACACAACTACTACGTCAGTGTGTCAGAACTCATCAGTGAGAGAGATATGGAGCTGAAGAAGCTTCAGGAGAGacagGCAGCCGAAATGGACAAAGTCATGCAGGAGCTGGGAAAGACCTTGAGTGATCATGATGTAAATACCGTGGCAGCGCAGCACTTTGACGCCCAGCAGGTATTGGAGAACAAGTGGGCCAGTGAGCTGAAGCAAGTCACGGGTATTCAGAAGCAAGAATACCAGGAGTGGGTGATCAAACTGCACCAGGACCTCCACAATCCCAACAACAGCACAATCAATGAGGAGATTAAGGTACAGTCTGGTCAGCTGGCGGAGGCCGGGGACATGGGGGCCAGACACTTCGAGGAGCAGCGACAGCTGGAGGAGAGCTTCACTATTCACTTAGGTGCTCAGCTGAAGACCATGCACAACCTTCGGCTGGTCCGTGCCAATGTGCTGGATTTCTGCAAGCACCGCCGGCACGGCAGTGGCGGAGCAAAGCTTCGGCGGCTGCAGACGGCGCTGTCGCTGTACTCCGTCTCTCTCTGTGGATTGGTCTTGCTTGTCGACAACAGGGTTAACTCCTACAGCGGCATTAAGAGAGATTTTGCCACAGTGTCTAAAGAGTGCACAGATTTCCATTTCCCCCGGCTGTCCGAGCAGCTGGAAGTGGTCCAGCAGGTGGTGCTCTATGCACGGGCCCAGCGCAGCAGCAAGCAGAGGGAACAGCCGGAGATGCCAAGAAATGGAAGCAGTGATGACAAAAACAAGAACATTGAACGAAACTCTTCTAACATCCTTCCTGGTGAATTTTACATCTCTCGGCACTCTAACCTGTCAGAGGTTCATATCGTCTTCCACCTGTGTGTGGACGATAATGTGCGGTCGGGAAACCTCACAGCCCGGGACCCGGCCATCATGGGATTGCGCAACATTCTGAAAGTGTGCTGCACTCACGatatcaccaccatcaccatcccACTGCTGCTGGTGCATGACATGTCTGAGgAGATGACTATTCCCTGGTGTCTAAAGCGAGCTGAGCTGGTCTTTAAATGTGTGAAAGGTTTCATGATGGAAATGGCTTCTTGGGATGGAGGGATCTCACGGACAGTCCAGTTCCTTGTCCCACAGAGTATCTCAGAGGAAATGTTCTACCAGCTGAGTAACATGCTGCCTCAGATCTTCAGAGTGTCCTCCACACTCACCCTGACGTCTAAACGCTGAACAGGACCCACAGCACTGAGGACAAGCTCCCAGAGTGTATTAAGATAGCAAGTCCATTCTCCTTAAAACAGAGACAGTACTAGGGTAGGAGTTTAGATTTACCACTGGTAAATGGCATTACTTCTTCACAGTTTGTGATTTTTAAGAGACTTGATTGGTCGTCGGCATCATTATCTGTCACTGGTTACGTGTTCTTGTGTCTGTAGCAGCTTTTCAGTCTTTTATAGCATCTCTCATGCTATATTGTGGCATTATCTGAAGCAGTCTGCTCTAATTATGTTGGTGTGGGTGGTAAAGAAGGTCAGTGCTGTCTGTACTGATCAGAGAGGAATGACGCTATCTTGCTGTGTCCTTCTTGGCGAAgacacagatttaaaaaaaaaacattccagtgTTTATTTAATCATCTTGGCTttattaattgtgtttattttatatatgcagatcagccataacattaaaaccactgccaGGGAAAAAGAATAACCCTGATGATTTAgtgatggatagatagatgtacAGTGTGCAATGTAAAGCAAGTgcttttaatgttgtggctgattgaTGTACATTATGTATAGCATGTGTATAGCATAAACAAGGCATATTTACCTATTGACTtaggtaaaataaatacatacatttaaaaaaatgcaataaattcCTGTGAATTATAA

Function

NR:

description
PREDICTED: protein C12orf4 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228357.3 True 2427 mRNA 0.47 14 22460046 22477263

Neighbor

gene id symbol gene type direction distance location
LOC103030249 zgc:77158,LOC108442730,LOC107572640,LOC107732819,LOC107575189,LOC107700881,LOC107686625 coding downstream 8015 22407392 ~ 22452031 (-)
fgf6 fgf6,LOC107575219,LOC107656433,LOC107725939,LOC107658909,LOC107583988 coding downstream 59531 22394040 ~ 22400515 (-)
LOC103030564 NA coding downstream 67974 22389756 ~ 22392072 (-)
kdm7a kdm7ab,LOC108442737 coding downstream 339909 22082541 ~ 22120137 (-)
cnot1 cnot1 coding downstream 384007 22053224 ~ 22076039 (-)
LOC103027701 cecr1 coding upstream 113769 22591032 ~ 22601463 (-)
LOC103027200 NA coding upstream 125363 22602626 ~ 22646944 (-)
LOC103026420 atp6v1e1,LOC107707480,LOC107701013,LOC108269194,LOC107575294,LOC107732807,LOC108442797,LOC102197685 coding upstream 199105 22676368 ~ 22683096 (-)
LOC103024959 NA coding upstream 304363 22781626 ~ 22789752 (-)
LOC103024231 tead1,LOC108269170,LOC105016886,LOC105018259,LOC106587195 coding upstream 314304 22791567 ~ 22820926 (-)
G207272 NA non-coding downstream 53517 22404280 ~ 22406529 (-)
G207282 NA non-coding downstream 57263 22402373 ~ 22402783 (-)
G207275 NA non-coding downstream 82408 22377120 ~ 22377638 (-)
G207269 NA non-coding downstream 83359 22326902 ~ 22376687 (-)
G207243 NA non-coding downstream 425399 22016600 ~ 22034647 (-)
G207315 NA non-coding upstream 105503 22582766 ~ 22583801 (-)
G207333 NA non-coding upstream 211477 22688740 ~ 22689592 (-)
G207505 LOC108441495 non-coding upstream 230171 22707434 ~ 22709445 (-)
G207506 NA non-coding upstream 234614 22711877 ~ 22735025 (-)
G207511 NA non-coding upstream 266675 22743938 ~ 22745827 (-)
LOC103034681 LOC108436714 other downstream 212933 21764104 ~ 22247113 (-)
LOC111195740 vma21,LOC108436707,LOC106604103 other downstream 477316 21979799 ~ 21982730 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other downstream 1677062 20677453 ~ 20782984 (-)
LOC103040850 hmgn5 other downstream 1947759 20463703 ~ 20512287 (-)
LOC103040644 LOC108443111 other downstream 2185141 20107097 ~ 20274905 (-)
LOC103035944 mical3 other upstream 408169 22885432 ~ 22956024 (-)
LOC103033401 spon1b,LOC108413171,LOC107701107,LOC108269023,LOC107745929,LOC107686649 other upstream 743206 23220469 ~ 23412954 (-)
dnajc24 dnajc24 other upstream 1461662 23938925 ~ 24020314 (-)
G207707 polr2c other upstream 2047471 24524734 ~ 24529067 (-)
G207772 NA other upstream 2470868 24948131 ~ 24948851 (-)

Expression


Co-expression Network