CI01000009_15802365_15836680 (COL28A1A)


Basic Information

Item Value
gene id CI01000009_15802365_15836680
gene name COL28A1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15802348 ~ 15836684 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_15802365_15836680.mRNA
AGTCATGGGTCACACATTGAGCTGGTCCCTGTTGTGTTTTGGTTTGCTGAGTGTTTGGGCTCAGGACTTCTATGAGGAAAGAACCGGGCCAACTAGAGTCAAGACCGGCGGACAGATGGCAGCCAAACTGCAAAAACATGATGGTCAAGCCATCCTGGATGAGGACTGCAGTCTGGAGTTGGCCTTCCTGCTGGACAGCTCTGAGACGGCCAAGGACAACCATCAGCAAGAGAAAAAGTTCACTATGGACATTATAGAAGGCCTCCAGAGCATCCGTTTGGATACAGGCCGCAAACTCAGCTGGAGAGCGGCCCTGCTTCAGTACAGCAGCCATGTCATAATCGAGCAGACCCTCAAACAGTGGAGAGGCTCGGAGCACTTCAAGAGCAGCATCGCACCGATGGCCTACATCGGCCACGGCACTTTCACCACCTACGCCATCACCAACATGACCAAGATATTCGTGGAAGAATCGAGCCCAGAAAGCATCAAGATTGCCCTGCTGCTGACCGATGGGTTCTTTCATCCCAGAAACCCTGATATCTTCTCTGCTATGGCTGATGCAAAGAACCAGGGTGTGAAGGTGTTCACAATTGGCATCACTCGTACTGCCAATGAGCCAGCCAACACAGCAAACCTGAGACTGCTGGCAAGTACGCCGGCCTCCAAATTCCTGTACAATCTGCAGGACTCCAATGTCATGGAAAAAGTCATTATTCAGATTGCTCAGCTGGCAAATGATGGGTGTCCTCTATCCAAGAAGTGTGTTTGTGAGAAAGGCGAGAGAGGACCCAGTGGCCCAGCGGGAAAGAAGGGTCGCCCAGGTGAGGACGGAACCCCTGGGGCTAAAGGTCAAAAGGGTGATCCTGGTTTGAGTGGACTTCCTGGTCGTGAGGGTGCAGAGGGGAAACCAGGCTACAAAGGAGAGCAGGGTGAAAGAGGAGAATGTGGTACCCCAGGAATCAAAGGAGACCGGGGTCCTGAAGGTCCAGTTGGCACACAAGGGTCCAGAGGTCTGCAGATAATGCTACACATCCCCAGAGACATCATTCAAATGTTCACGCTAGATACTGTAACATACTATTTCATGTTTCCCCTGCAGGGTTTACCAGGACCACAGGGTGACATCGGACCAGAGGGCCCACAGGGCAAGAAGGGTGAGCGTGGCCCTGCTGGCCCACCAGGAATACAGGGCGACAGTGGAATTGGACTTCCTGGACCAAAGGGAGATATGGGATTTCAGGGGAGACCAGGTCCTCTGGGTCCACCAGGCATAGGCGAGCCAGGTCTGCCTGGGCCTCAAGGGCCACAGGGGGTTCAAGGTGAGAAAGGACCACAAGGAGAGGGTTTTCCAGGTCCAAAGGGGGACCGGGGTCTGGAAGGGCCGAAGGGACCAAGAGGACAGCCGGGCCTGGGAATCAAAGGCGATAAGGGTGAGCTGGGGCCTCCGGGTTTGCCAGGACCAATTGGACTCACAGGGCTTGGCATTCAGGGTGAAAAGGGTGTTGAGGGTCCGAGGGGGCCTCCAGGAGGTAGAGGACCACCAGGAGAGGGCTTCCCTGGTCCCAAGGGAGAACAAGGTTTACCAGGAGAGATGGGGGCGCCAGGAGAGAGAGGGCAGGGCGAACCTGGAGCAAAGGGTGAGCCTGGTGCATCTGGACTGGCCGGGGTGCCTGGACTTCCCGGGGAGGACGGTGCTCCAGGACAAAAGGGTGAGCCTGGGGCATCAGGTTTGAGGGGACCTGAAGGGGCTCCAGGAATTGGCACTCAAGGAGAGAAGGGAGATCAGGGCCAACGTGGCGTTCGAGGGTTGCCAGGTTCTCTTGGTATAAGTGGCCCCTCAGGATCAAAGGGAGAGCCAGGCATACCAGGAAGGCTGGGCATGCCAGGATTACCTGGACGAGCTCTTGCAGGACCAAAGGGTGATATGGGTCCCACGGGTCCTCCGGGACCAATCGGAGAGACTGGTTACGGATTGCCTGGTCCAAAGGGTCTGCCTGGTTTACCAGGTCCACAAGGTGAGCCCGGCCCTGAGGGCATTGGTCTTCCTGGACCAAAGGGAGATGTCGGATTCAGGGGTTTGCCTGGTTTGCCAGGACCACCTGGTGAAGGACTGCAGGGACAGCCAGGCAACATGGGAAGACCAGGTCCCCCAGGGCCACACGGACCCCCAGGGGAAGGTATTCAGGGGCCCAAAGGTGATCAGGGGGCTCCTGGAGTGACAGGACCGAGGGGCCCATCAGGAGAGGGACTTCCAGGCTCCAAGGGTGATCGTGGTTTGCCGGGGGAGAGGGGCTTCAAAGGAACGAAAGGTGACTTTGGTGACCCAGGGACTCCAGGACTAGCTGGAAGACCAGGAATCAAGGGCGAACAAGGACTCACAAGAGAAGACATAATCAAGCTGATTAAGGAAATCTGTGGATGTGGTATTAAGTGCAAGGAAAGGCCCATGGAGCTGGTGTTTGTGATTGACAGCTCCGAGAGCGTGGGCCCGGAAAACTTTGAGATCATCAAGGACTTTGTCACAGCCTTGGTGGACCGTGTCACAGTGGGCCGTAATGCCACGAGAATTGGTCTCATTCTTTACAGTTTGGACGTCCATCTGGAGTTTAACCTGGCCAGGTATATGACAAAACAGGATGTCAAGAAGGCGATCAGGAACATGCCTTACATGGGAGAGGGCACCTATACTGGCACCGCCATCCGCAAAGCCACACAAGAGGCCTTTTACAGTGCCAGGAACGGTGTCAGAAAAGTAGCCATCGTCATTACGGATGGACAAACGGATAAAAGGGAACCAGTTAAGCTGGATATTGCAGTACGTGAGGCTCAGGTGGCGAATATTGAGATGTATGCACTGGGTATCGTGAACTCCTCTGACCCAACGCAAGCAGAGTTCCTGAGAGAGCTCAACCTCATTGCCTCTGACCCTGACAGTGAACACATGTTCCTCATTGATGACTACAACACACTGCCAGCTCTGGAGTCTAAACTAGTTAGCCAGTTCTGTGAGGATGAGAACGGGGCCCTCTTCTTCAACCGCATTTCCAACAGCTTGAATGGAAACAACGGCTATGGCTACAATAATGGCCAAGAAGGCACTTACTCATACGGGAATACTGTTTATGGGAACAGATTTCAGGAGGCACTGGACAGATCGACGGGTCACACCAGAGGCAGAGGACACAGCATACCTCTCCCCATCAACCCCGGCCCTCTCAAAAAACAGGTGGAGGATGACTTTGAAGGGGAGGATCTTGACATAAAGACACAAACTCAAGGTGGAGGCACTATTGCTGTCGTCAAATCAGCTCCCCTGGATCCCCGGTGTCTGCTCAGTCTCAGTCAGGGTACCTGTAGAGACTACATCATTCGCTGGTACTACGACAAACAGGCAAACGCTTGTGCTCAGTTCTGGTACGGAGGCTGTCAGGGCAACGACAACCGTTTCCAGACAGAAGAAGAATGCAAGAAGATGTGTGTCCTCAACAACACAGGTATTATTCACTCCTGCAGACATAAATTCAATAGTTGTTATAAAACCTAAATATTGACAAAAATAAA

Function

symbol description
col28a1a Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in intestine; liver; and muscle. Orthologous to human COL28A1 (collagen type XXVIII alpha 1 chain).

NR:

description
collagen type XXVIII alpha 2 a precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_15802365_15836680.mRNA True 3564 mRNA 0.54 33 15802348 15836684

Neighbor

gene id symbol gene type direction distance location
CI01000009_15791178_15798430 BBS5.L, BBS5 coding downstream 3918 15790849 ~ 15798430 (-)
CI01000009_15784118_15789896 KLHL41, KLHL41A coding downstream 12452 15784080 ~ 15789896 (-)
CI01000009_15726357_15736168 PHGDH coding downstream 66180 15726145 ~ 15736168 (-)
CI01000009_15716557_15721525 KLHL23 coding downstream 80752 15716477 ~ 15721596 (-)
CI01000009_15693066_15694538 UGT5B4, UGT5B6 coding downstream 107719 15692994 ~ 15694629 (-)
CI01000009_15847186_15853675 CCDC89 coding upstream 10234 15846918 ~ 15853675 (-)
CI01000009_15975897_15978506 RDH1 coding upstream 139046 15975730 ~ 15978506 (-)
CI01000009_15981692_15985027 DHRS9 coding upstream 145001 15981685 ~ 15985027 (-)
G60367 NA non-coding downstream 3389 15781299 ~ 15798959 (-)
G60472 NA non-coding downstream 51354 15750698 ~ 15750994 (-)
G60376 NA non-coding downstream 55862 15745468 ~ 15746486 (-)
G60469 NA non-coding downstream 83187 15718562 ~ 15719161 (-)
G60468 NA non-coding downstream 90201 15708004 ~ 15712147 (-)
CI01000009_15654061_15662554 ARPC2 other downstream 146379 15653760 ~ 15663026 (-)
CI01000009_15318811_15390382 TNS1 other downstream 359301 15318811 ~ 15390382 (-)
G59941 NA other downstream 669845 15132104 ~ 15132503 (-)
G59811 NA other downstream 914884 14862397 ~ 14887464 (-)
G59490 NA other downstream 1764475 14033564 ~ 14037873 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location