LOC103036462 (LOC108436702,LOC105906303,LOC106604272)


Basic Information

Item Value
gene id LOC103036462
gene name LOC108436702,LOC105906303,LOC106604272
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 21612833 ~ 21617288 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228378.3
CAGGTCTCCAGGAGCTGTTTCAGACTGACACTTCACTTCAGCTTAcatttgttttgtctctctgaaATTCCAGTATGAAGGATAAGAGTTTAGAACTAAAGGAACGCTAGGGTAGCTATCGGATTCAGGACTGCTGAAGCTGGCACTGGGATTTTCTTGTTTGGAGAAGACCAAATGGAGTTTTGAAGCTTTTGAAGTTCCTCAAAGAATGATTGTGCACCAGGCCCCCAACATGAGTTTAATGGACATTTCCAAGATCTTTTCTCTCCTCCAGCCcaaggaggatgaagaagacgGCTGCCAGCAGCTGAACCAGGCCATCGCCGATGATGACGACAAGCTCCTGGCTGAGCTTCTTGCTCAGGAGCAGTATCGGAGGTGCATCAACAGCCGCAGTGGCTGGGGTGTCCCAGGCACGCCGCTGCGTATGGCAGCTGCCCATGGTCACCTGCGCTGCTTGGAGGTGTTGCTGGCCCACAGGGCCGAGGTGGACAGCCTGGACGTCAAAGCTCAGACTCCGCTGTTCACCGCTGTTAGCGCCAAACATCTAGACTGCGTCGTTGCTCTACTCAAAGCTGGCGCTGATCCCAACGGCAGCCAGTATAACAACAGTTCCCCTGTGCTGACAGCAGCCAGAGAGGGCGATGTGGACATTCTCAAGGAGCTTCTGAGGCACGGGGCTGAGGTGGACGTCAGGGCCAAGGTGCCGGACTGGGCCTCCAATGCCACAACATGCAGAGGACCTCTGTACATGTCTGCCGTTTACGGACACCTGGACTCCTTCAAGCTGCTGCTTCTGCACGGCGCTAATCCAGACTTTAACTGCACTGATAAAAAGTTGCTGGCCAGAATCAAGCAGCCAAAGACTGTGTTAGAGATGTGCATCAGGTACGGCTGTGGAACTGAGTACATTCAGCTGCTCATAGACTTTGGCGCCAGCGTCTACCTCCCTGAGCTCATCGTAGATAAAACCACCCAGCAGAACGAGGCGGTGGTCATGCTGCTCAAAGAAAGAGTCTGCCCGAAAACACTGATGTCCCAGACACGACTCGCAATACGCCGCTACCTTACCATGACAGATAAATCAAGCTCGATCGATAGCCTGGATATTCCTCACATTCTAAAGAACTATTTAAAGCACATTACATGACCAGCACATTTATGATTACTatattaaacgtttttttttttttattattttgtacggTTTCTGATTGTTACAATGCAATTTTACTGATAATcaagtttattaaaagtcatGACGTGTTTATTCTGTATAGCaatgtatttattgattaataaaacaataaattattgaacTAT

Function

NR:

description
PREDICTED: ankyrin repeat and SOCS box protein 12-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K10334 ASB12; ankyrin repeat and SOCS box protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228378.3 True 1323 mRNA 0.48 3 21612833 21617288

Neighbor

gene id symbol gene type direction distance location
LOC103037071 arhgef9,LOC108436700,LOC108269078 coding downstream 13114 21530760 ~ 21599719 (-)
tenm1 tenm1,LOC105906218 coding downstream 257196 20980755 ~ 21355637 (-)
hdx hdx coding downstream 812306 20786014 ~ 20800527 (-)
LOC103041461 chmp1b,LOC101476317 coding downstream 1171337 20433525 ~ 20441496 (-)
itm2a itm2a coding downstream 1230823 20372886 ~ 20382010 (-)
LOC103036162 zc4h2,LOC103036162,LOC108436709,LOC108269407 coding upstream 5956 21623244 ~ 21630047 (-)
LOC103037493 NA coding upstream 345255 21962543 ~ 21976174 (-)
LOC103032567 NA coding upstream 419143 22036431 ~ 22042385 (-)
cnot1 cnot1 coding upstream 435936 22053224 ~ 22076039 (-)
kdm7a kdm7ab,LOC108442737 coding upstream 465253 22082541 ~ 22120137 (-)
G207038 NA non-coding downstream 43244 21494614 ~ 21569589 (-)
G207033 NA non-coding downstream 82602 21527695 ~ 21530231 (-)
G207035 NA non-coding downstream 88641 21482838 ~ 21524192 (-)
G207000 NA non-coding downstream 208135 21404457 ~ 21404698 (-)
G206998 NA non-coding downstream 215905 21396714 ~ 21396928 (-)
G207068 NA non-coding upstream 69144 21686432 ~ 21687675 (-)
G207218 NA non-coding upstream 197978 21815266 ~ 21815650 (-)
G207232 NA non-coding upstream 329541 21946829 ~ 21948628 (-)
G207242 NA non-coding upstream 382953 22000241 ~ 22012713 (-)
G207243 NA non-coding upstream 399312 22016600 ~ 22034647 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other downstream 829849 20677453 ~ 20782984 (-)
LOC103040850 hmgn5 other downstream 1100546 20463703 ~ 20512287 (-)
LOC103040644 LOC108443111 other downstream 1337928 20107097 ~ 20274905 (-)
LOC103046671 NA other downstream 1618031 19925031 ~ 19994802 (-)
LOC103034681 LOC108436714 other upstream 146816 21764104 ~ 22247113 (-)
LOC111195740 vma21,LOC108436707,LOC106604103 other upstream 362511 21979799 ~ 21982730 (-)
LOC103035944 mical3 other upstream 1268144 22885432 ~ 22956024 (-)
LOC103033401 spon1b,LOC108413171,LOC107701107,LOC108269023,LOC107745929,LOC107686649 other upstream 1603181 23220469 ~ 23412954 (-)
dnajc24 dnajc24 other upstream 2321637 23938925 ~ 24020314 (-)

Expression


Co-expression Network