CI01000009_15847186_15853675 (CCDC89)


Basic Information

Item Value
gene id CI01000009_15847186_15853675
gene name CCDC89
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15846918 ~ 15853675 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_15847186_15853675.mRNA
ATGACATCTCCTCGGAAAATCCAAATAGATCTCAAAACGATGATCAAAGACACTAAACAGGATATGGATGATGTGCACCAAGCCCTGGAAAAACTCCGAAGTCTCTCCCAGGAAGAGAGGACAGAGGCAGAAGTGCTGCGTTCAAGAATCGACGAGCAGTCTACTCTCATCTGCATCCTGAAACAGAGAGCAGATGAGATGCTTCTGCGCTGTCAGGCTCTGGAGAAGATCAACACAGAGCTGGAGAACCTGAGAGCCAATGTGCAGGTGGAGCTGGAGAACGAGAGGAAGAAATCCGAACTGCTGGAGCAGAGATTCATGCACCTGGCCTCCAACCACAGAGAGCTGATCAACTTCAAGAACGAGTACAAAAGCCAGAATGCGAAGCTGGAGAAAGAGAATGAGAGACTCAGAAAGGAAAATGAAACGCTTTTCAGCAAGGAAATGCAAGAAAAAGAGGAGACAATCCTCAAACTGACCCAAGAGCTCAAGGACTTGGCAGAGCAACATAAGATACTAGAAACGGAGTATCATGAAATAAGTACAATAAGTATATTAGTCACTCTTTATGATCCCAACAGGGAGAAAACGACAGGTTTCCAGATTAAACTGAAAGAACTGATCAACCTCCATCAGATCAAAGAGGCATCTTTGAAGAACGAACTAAGCGACACACAAAAACAGCTGAAGAATGCTGTAGAGATGTGTGCAGAGTTGGATCTCAAACTAAGACAAACACAGGAAAAAGAATCATTGAGAGACACAGACACTCAGGAGAGACTGGAGAAACTCATGAAGGAAAAGGATGAGCTAATCGATCTCTCTGTGCAGCGGGGCAAAATTATTCTGGACAAACAAGCTGAAATTCAGAAGCTGGAGAGGAAAAGGCAGGAAGCTGAGAATGGCAGACTAGATGCAGAGAACAGGTTTGAAAAGGAAGCAGCAGCTGTGAACAGTGAGTTAAGAGTGAAGGAACTACAGGATGCCTTAGAGAGGGCAGAGGACACCTGCGATGAGTTGAAAAAGGCGTTTGAGGCATTTAAAAAGCACAGCAGTGAACTGCTTGAAAAGGAGAAGGATTTAAACTGCAAACTTCGCCACATGGTCATCTGAGTCATCCATCCCATTTACAGTGCATTTCTACCATAAAAGTCAGCCATTATAAAGCAAAATTCACTCACTTCCTGCTCTGAGCTGAATCATCACACTTGGAGTGATTGTATATAATGAACCAGAAGACAAAGATGAGGTGAGATTTTCCTTAAGAGAACGTCTTCCGTCAGTAGAGGGCAGTGTAATGTGTTTCTGTAGGGCAAAAGTGGGTTTGTTGGTAGTTTGCAAATAGGTTGTTTTGGCTGAACTGTGACTTTTTGAAATTAAA

Function

symbol description
ccdc89 Predicted to be located in cytoplasm and nucleus.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_15847186_15853675.mRNA True 1381 mRNA 0.44 7 15846918 15853675

Neighbor

gene id symbol gene type direction distance location
CI01000009_15802365_15836680 COL28A1A coding downstream 10234 15802348 ~ 15836684 (-)
CI01000009_15791178_15798430 BBS5.L, BBS5 coding downstream 48488 15790849 ~ 15798430 (-)
CI01000009_15784118_15789896 KLHL41, KLHL41A coding downstream 57022 15784080 ~ 15789896 (-)
CI01000009_15726357_15736168 PHGDH coding downstream 110750 15726145 ~ 15736168 (-)
CI01000009_15716557_15721525 KLHL23 coding downstream 125322 15716477 ~ 15721596 (-)
CI01000009_15975897_15978506 RDH1 coding upstream 122055 15975730 ~ 15978506 (-)
CI01000009_15981692_15985027 DHRS9 coding upstream 128010 15981685 ~ 15985027 (-)
G60479 NA non-coding downstream 43127 15802887 ~ 15803791 (-)
G60367 NA non-coding downstream 47959 15781299 ~ 15798959 (-)
G60472 NA non-coding downstream 95924 15750698 ~ 15750994 (-)
G60376 NA non-coding downstream 100432 15745468 ~ 15746486 (-)
G60469 NA non-coding downstream 127757 15718562 ~ 15719161 (-)
CI01000009_15654061_15662554 ARPC2 other downstream 190949 15653760 ~ 15663026 (-)
CI01000009_15318811_15390382 TNS1 other downstream 403871 15318811 ~ 15390382 (-)
G59941 NA other downstream 714415 15132104 ~ 15132503 (-)
G59811 NA other downstream 959454 14862397 ~ 14887464 (-)
G59490 NA other downstream 1809045 14033564 ~ 14037873 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038133 zgc:172182 coding NC_007120.7 CM002893.2 48386928 ~ 48407408 (-)