vamp7 (vamp7)


Basic Information

Item Value
gene id vamp7
gene name vamp7
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 20099499 ~ 20104840 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228404.3
GGGTCTGGGTGAAGCTGGGCGATGCGGAAAGAGCTCGCAGGAGCTGTGGAGGATTGTTTTCATGACTACAGCGTGTGGATGGACTCATATGCGTGATTTAACAGCGTGACAGCACCTGCAGCAGTTTTTAGTCAGTAATTCGGACCTCATCACCCTCGTCCCTGCTATGGCAATCCTCTTTGCTGTGGTGGCTCGTGGAACAACCATACTGGCCAAACATGCCTGGTGTGGTGGAAACTTTCTTGAGGTGACAGAGCAGATTTTGGCCAAAATCCCGTCCGAAAACAACAAACTCACCTACTCCCATGGCAGCTATCTCTTCCATTACGTCTGTCATGACAGAATCATCTATCTATGTATCACAGATGATGATTTTGAAAGGTCGCGTGCGTTTAGCTTCCTCAATGAGGTGAAGAAACGTTTCCAAACCACCTATGGCTCCCGGGCTCAGACAGCTTTACCCTACGCCATGAACAGTGAGTTCTCCAGCACTCTCGCTGCACAAATGAAACACCACTCAGACCCGAGAGGCTCAGATCGGTTGACAGAAACGCAAATGCAAGTGGATGATCTGAAAGGAATTATGGTCAGAAACATTGaTCTGGTGGCACAGAGAGGGGAGAAGCTGGAACTTCTCATTGACAAAACTGAAAACTTAGTTGATGCAtcAGTAACCTTCAAAACTACAAGCCGCAACCTTGCCCGTGCCATGTGTATGAAGAACCTGAAATTAACACTTATCGTCGTACTGGTATCAGTTGTGATTCTTTACATCATAGTATCTGCAGCCTGTGGAGGACTCAGCTGGCCCAGCTGCCGGAAGAAGTAGGAGGGGAATCTGGAGCTGAGCTCTGGATTAAGCCCCTCCCTCCCCTTTCTTTCTGGCCTGGAAGGGAAACGAACCACTGTCTCAAGATCGACACACCACTTGAACTCACCCATCCCTTTATCAGGCATCACTGACCTGCCCTCTGTCTCGCCTCCTCCTCCCTCTTAACGGTGACTGTAGCCTTACGGACAGAGGAGTCAGGACAGCGCCTGGACAACCTTTTACAAACCTTCCTCCGTTCCTCCGTTCTAAGATCGCTCCGGTGTTCAGATCCATATAGCAGTATGTTTCCTGGGAAACTTCAACACGATTTATCTGCTCTCGTTTATTTTCTTCACCCCTAAAATGTGATGCAGTTATGCTTTATTAAAGTAGAATTATGAAGA

Function

symbol description
vamp7 Predicted to enable SNAP receptor activity and SNARE binding activity. Involved in several processes, including endosome to lysosome transport; leukocyte degranulation; and positive regulation of histamine secretion by mast cell. Located in several cellular components, including pseudopodium; secretory granule; and trans-Golgi network. Part of SNARE complex.

NR:

description
vesicle-associated membrane protein 7

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08515 VAMP7; vesicle-associated membrane protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228404.3 True 1215 mRNA 0.48 8 20099499 20104840

Neighbor

gene id symbol gene type direction distance location
LOC103045046 LOC103045046,LOC108443105,LOC103391141,LOC107573550,LOC108269394,LOC107674873,LOC101076287 coding downstream 15039 20077520 ~ 20084460 (-)
prps1 prps1,prps1b,LOC103391169,LOC107565138,LOC108413289,LOC104923196,LOC107746314,LOC107684920 coding downstream 121641 19968907 ~ 19977858 (-)
LOC103046360 NA coding downstream 143920 19952166 ~ 19955579 (-)
LOC103047376 LOC108413285 coding downstream 166513 19914549 ~ 19932986 (-)
znf711 znf711,LOC107684921,LOC107746145,LOC107569605,LOC107674883 coding downstream 186191 19905743 ~ 19913308 (-)
LOC103043510 ednr,LOC103043510,LOC108443108,LOC108268917,LOC104965768,LOC106930986,LOC103470946,LOC106530016,LOC108238010 coding upstream 18307 20123147 ~ 20141059 (-)
LOC103043211 LOC103366304,LOC105906309,LOC108268916,LOC102229095,LOC100704732,LOC107386560,LOC101162152,LOC103395326,LOC105927798 coding upstream 75470 20180310 ~ 20188753 (-)
cysltr1 cysltr1,LOC107703837,LOC107576072,LOC107591877,LOC107688612 coding upstream 135027 20239867 ~ 20244489 (-)
itm2a itm2a coding upstream 268046 20372886 ~ 20382010 (-)
LOC103041461 chmp1b,LOC101476317 coding upstream 328685 20433525 ~ 20441496 (-)
G206784 NA non-coding downstream 13006 20086177 ~ 20086493 (-)
G206782 NA non-coding downstream 24809 20074425 ~ 20074690 (-)
G206763 NA non-coding downstream 247538 19814974 ~ 19851961 (-)
G206685 NA non-coding downstream 418289 19601599 ~ 19681210 (-)
G206653 NA non-coding downstream 532955 19566212 ~ 19566544 (-)
G206843 NA non-coding upstream 260074 20364914 ~ 20372471 (-)
G206856 tbx22 non-coding upstream 313476 20418316 ~ 20418553 (-)
G206859 NA non-coding upstream 428740 20533580 ~ 20537400 (-)
G206912 NA non-coding upstream 613109 20717949 ~ 20725371 (-)
G206991 NA non-coding upstream 1096333 21201173 ~ 21208804 (-)
LOC103046671 NA other downstream 104697 19925031 ~ 19994802 (-)
LOC103046056 NA other downstream 131468 19957477 ~ 19968031 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other downstream 971773 19037694 ~ 19127726 (-)
G206575 NA other downstream 1260583 18838369 ~ 18838916 (-)
LOC111195732 NA other downstream 2057560 18039675 ~ 18041939 (-)
LOC103040644 LOC108443111 other upstream 2257 20107097 ~ 20274905 (-)
LOC103040850 hmgn5 other upstream 358863 20463703 ~ 20512287 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other upstream 572613 20677453 ~ 20782984 (-)
LOC103034681 LOC108436714 other upstream 1659264 21764104 ~ 22247113 (-)
LOC111195740 vma21,LOC108436707,LOC106604103 other upstream 1874959 21979799 ~ 21982730 (-)

Expression


Co-expression Network