LOC103046360


Basic Information

Item Value
gene id LOC103046360
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 19952166 ~ 19955579 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228409.3
CGGGTGGAGGTTTATTGGAAACGGGTGGATTTAAAGGAAAACGCTGGTTTCACCCCATTGGCCAATGACGTAACGGTACGTCAGAAGAGGCTAAAGAAAATCCGAGCAGAAGCCCTAAATGTAAAAAGGGCGAGAGAAGCGGATCTGATTACAGAATCTCCTCTTTAATTAGAGACAGGGACGGTAATAAAGATGAAAGGGTGATCTGATAGAACTGAATCTAAAAACGGGATGTTTTCCTTTAAAATCTGATCTGAAACCTGCAGCGAGTAGCTGATGAAGAAGTGATGCTGGAAGGGCTCGGTGCCTCTCAGAAGACCAGAAAGAAAGTAAGAGAAGAGAGATGGGGTGGAGTCCTGCAAACAGTGATAAAGAGCAGCATCAAAAGGATGCGGACCCCACAGCCTGGTTCCGCAAGTACAAGCATGGTGGAACGTCTAGCCTCATCTCCACTCTGACCACGGTGATGACCTTCCCCATCTACAAGACGGTGTTCCGCCAGCAGCTGCACAGCTCCGGGTTTCGTGAGACGGTGGCCCAGCTGAACAAGGAAGGGCCTTTGAAGTTGTACCGAGGTGTAGCACCACCTTTGTTGATGAAGACCCTCAATGGGACCCTCCTTTTTGGCCTTCAAGGCACCCTTTTGCAACGGCTGTCCAGGGCTGAATCCATCTTGCCTGGGACGGTCCTTCCTGCCCTGGCCGGGCTCGGGGCGGGTGTGGTTGAGGCCCTGATTTTCACCCCCTTCGAGCGTGTGCAAAATATACTCCAAAACAGCGGCAATGACCGCAGTCTACCCACCATTAGGAGCATCCTGGTCCGGCTAAGGTCTGAAAACTTAGCTCAAGGCTTTTACCGAGCCTTCTTGCCTATACTCGCCCGCAACGCCTTAGGGAGCAGCCTTTACTTTGGCCTAAAAGATCCCGTGTCCAGTGCCTTAAGGGAGCAGGGTCTTTCCCCCGTggcctcctccttcttctcagGTGTTTTCAACTCTATGGTGATCAGCCTACCACTATACCCCATGTCTGTGCTGGTGGCCAACATGCAAGCCAAAGTTGGTGAAGAGAAGCTGGGGCTGAGGGCCAGCGCGCAGAAGCTGTGGAGAGCCAGGCAGTGCAGCCTGATCCTGCTCTACCGTGGAGGTTCACTGGTCATTCTCCGCTCCTGCATTTCCTGGGGCATCACCACTGCCATATATGACCGTCTGGAAAACCGCACCAACTAAGCGGGATAAACACCAGGGAATTCCGTCTATTGCTCAGCAGTAATGTTATCTGGGTTCAGGGATAagtctgtgtttttgtgcaccaaaaccttttttttttttcaaaaatcagCATTGAccatatatatttcttaaaacttGACAAAGCATTTCCAAAGCTTTGCATGTATTACTTAAACAGTAGTAAGAGGTTGAAAATGCATCAGTGTGTCATGATGCATTTAAGAGTGAAGGTGAATTCTGGCAGTGGTGTCTCAGCAGTAAGACCATTGACCGGACCATTGATATTGACCATTTGGTGAGCTGTGGTGGGTGCCCAGCGGTCTGGTCTGTGTGTGCGCGCTTactagtgtgtatgtatgtgtattcaCTGCACAAATGGGTTAAAGGTGTAGGCCACATTTAATCTGTAGTGAATCTTAATTACATTAAGCATTGAATATGTTTCTCAAGAGCTACTCACAATATCAGAGATTCACACCTATGGAAAGTATTGTGtattggtttttttttgttgttgttttttacccACCATTATTTCAGGCAAAATGATAtactcaagtgttttttttttgttcatgttaTGTTTAAGGTAGTATCATAAACCAAGTCACTGTGCAACAAATAAAggttattttaagatttttgtttCCATAAATATGGAAATATCATTCATACTTGACATGTGTATTGTGTGAACTCTGGTGctcaaaactaaaaatgagaaaagagggGAAATGTGTTGCATTTCTGTGCATATAAGTTTAGTTTTAGGCTAAATTAGCACTTTACTGTTTTGCAGTGTACTAGTAGTGCTTGCAGTGTCCATCAGGCAGTGTTTTGGGCTACTATCCTCATattgctaggttagctaacctaactagccaCATTACCTCagactttacattacattattgttTACATTTACTGACATTAAACATTACAAACACTTGACATCTGACATCTGTAAAATTACCAGTTTGGAAatactgaaatgttttttacatCAGTCTTAACTCACACTGAagagttcagttcattttatcttacatttttaaaaccttatttttttttatattacttttaatatcttctaatattactattaaccAGTTGgggtaatagtaatagtaatttgGTACTGATTCCTTGTatgattttattgttaaatacGTTTCTATTTTTATCCaatgcaaaatatttttaactggtTGTTCATCGTTTTATTACCTTtgaatgttacttttttgttttgaatatgtttgcatgtattaaaggtgctttaataaataaaaaataatcacaatcctaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228409.3 True 2540 mRNA 0.42 2 19952166 19955579

Neighbor

gene id symbol gene type direction distance location
LOC103047376 LOC108413285 coding downstream 19180 19914549 ~ 19932986 (-)
znf711 znf711,LOC107684921,LOC107746145,LOC107569605,LOC107674883 coding downstream 38858 19905743 ~ 19913308 (-)
LOC103041262 LOC108440093 coding downstream 328923 19606025 ~ 19623243 (-)
LOC103021299 NA coding downstream 351168 19594304 ~ 19600998 (-)
LOC103041563 LOC108440096,LOC103359160 coding downstream 367931 19576497 ~ 19584235 (-)
prps1 prps1,prps1b,LOC103391169,LOC107565138,LOC108413289,LOC104923196,LOC107746314,LOC107684920 coding upstream 13328 19968907 ~ 19977858 (-)
LOC103045046 LOC103045046,LOC108443105,LOC103391141,LOC107573550,LOC108269394,LOC107674873,LOC101076287 coding upstream 121941 20077520 ~ 20084460 (-)
vamp7 vamp7 coding upstream 143920 20099499 ~ 20104840 (-)
LOC103043510 ednr,LOC103043510,LOC108443108,LOC108268917,LOC104965768,LOC106930986,LOC103470946,LOC106530016,LOC108238010 coding upstream 167568 20123147 ~ 20141059 (-)
LOC103043211 LOC103366304,LOC105906309,LOC108268916,LOC102229095,LOC100704732,LOC107386560,LOC101162152,LOC103395326,LOC105927798 coding upstream 224731 20180310 ~ 20188753 (-)
G206763 NA non-coding downstream 100205 19814974 ~ 19851961 (-)
G206685 NA non-coding downstream 270956 19601599 ~ 19681210 (-)
G206653 NA non-coding downstream 385622 19566212 ~ 19566544 (-)
G206634 NA non-coding downstream 436047 19514117 ~ 19516119 (-)
G206640 NA non-coding downstream 441007 19495432 ~ 19511159 (-)
G206782 NA non-coding upstream 118846 20074425 ~ 20074690 (-)
G206784 NA non-coding upstream 130598 20086177 ~ 20086493 (-)
G206843 NA non-coding upstream 409335 20364914 ~ 20372471 (-)
G206856 tbx22 non-coding upstream 462737 20418316 ~ 20418553 (-)
G206859 NA non-coding upstream 578001 20533580 ~ 20537400 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other downstream 824440 19037694 ~ 19127726 (-)
G206575 NA other downstream 1113250 18838369 ~ 18838916 (-)
LOC111195732 NA other downstream 1910227 18039675 ~ 18041939 (-)
LOC103033759 NA other downstream 2099975 17843966 ~ 17852191 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 2651173 17259786 ~ 17300993 (-)
LOC103046056 NA other upstream 1898 19957477 ~ 19968031 (-)
LOC103040644 LOC108443111 other upstream 151518 20107097 ~ 20274905 (-)
LOC103040850 hmgn5 other upstream 508124 20463703 ~ 20512287 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other upstream 721874 20677453 ~ 20782984 (-)
LOC103034681 LOC108436714 other upstream 1808525 21764104 ~ 22247113 (-)

Expression


Co-expression Network