fgf16 (fgf16,LOC107654780,LOC107731802,LOC107575101,LOC107746175)


Basic Information

Item Value
gene id fgf16
gene name fgf16,LOC107654780,LOC107731802,LOC107575101,LOC107746175
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 19258598 ~ 19268334 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228421.3
tttttctctttctcaacaTCTCTGTGTAATCATCCCGCAGCGCGTGAGAGGAGCAGCAGAGCAGAGTGGCTCCAGCACCAACAGCATCTCCACCATCTCCCAAATCTCCACCACCTCCAACATCTCCAACATCTCCACCTCCAGCAGCCCGGCGGCGGCAGCAGCGCGTCTCCTCCGCCCGGCTCTACGGCTGATGCGCGCGGCTGAGGGGGATGCCAGCCGGCCGGGTCCCGCCTCTCGCTCTCCCGTTAGATAATATAATGCGCGCGCGGCGGCTATATAAACACTAGCGCGCGAGAGATGATGAGCAGTAGCGCGGGACTGGACGGCTGGGGTGACCGGAGTTTACTGAAGTGCTGAAGTGAGCGCGCGCGCGTGTCCCCGGCGGGACCTTCTGCATGGGACAGGGTCTAGTGCGCGTGGACAGGGTCTCCAGAGCGCGCGCACGGTTATCTGCGgtgtgagagagtaagagagtgaatgagagagtgagagagagtgtgtgtgattgagtgagagagagtgagcagctCGGTCAGTCACCCCGCGCCGCGGTCATGGCGGATCTCGGCGGCTTCCTGAGCTCCATAGATGTGGATTTACAGAGCCTCCCGGGCCTCGGGAACATCCCGCTGTCCGACTCCCCCGCCGGGCTGACGGAGCGGCTCGGGCTGATCGAGGGGCGGCTCCAGCGCGGCTCCCTGCCGGACTTCGACCACCTGAAGGGCATCCTGCGCCGCCGCCAGCTCTACTGCCGCACCGGCTTCCAGCTCGAGATCTTCCCCAACGGAACCGTGCACGGGACCCGGCAGGATCACAGCAGATTCGGGATCCTGGAGTTCATCAGTCTGGCTGTGGGTCTGGTCAGCATAAGAGGTGTAGATGCTGGCCTTTACCTGGGAATGAATGAAAAAGGAGAGCTCTATGGGTCGAAGAAGCTGACGGCTGAGTGTGTTTTCCGCGAGCAGTTTGAGGAGAACTGGTACAACACATACGCCTCGACGCTCTACAAGCACGCCGACACCGAGAGGTACTACTACGTGGCTCTGAATAAGGACGGCTCGCCTCGAGAGGGCGGGAGGActaaaaaacatcagaaattgACTCATTTCCTGCCCCGGCACGTGGAGATCGAAAAGATCCCGCCGGCTTACAGGGACCTGTTCCAGCACAGGTGACCAGAGCTCCAGCCTGTGCTGCAGACGGagcgaagaagaagaagacgacgACGATGAGGGGGAAGGAAGTGGTGACTGTAAGGAGGGGACGGACACCGGGAGGACTGACGGAGACCCTCCCTCTCGCTCTTCCCCTCACCACTGTTTAGATTTGCCTTCTGGTCCAAAGCAAGGAGTCCCTCTCCAGTGGTGACTGAGATAAACAGTACGTGTGTGTTCCTGGACGGCTCCGTTTCCTCTCCTTAATGGGTTTTAAACCACAGAGCGGAGAGGACATTCCTCCCGCCGTCGCCGGTGCCAAGAGGTGTTCGAGGGAGAGGTGTTGACTTCAGATCCCCATGACTGGACCGCCTCCGTGTCACGCAACGTCTCCGTCCTGAGACGGTCAGGAGCATGCATACGGTGCATCTGCTAAAGTTCTCAAGCATCCACTCGTGATGGGAATCGTACCACTTCTTTGACTCTggctttaag

Function

symbol description
fgf16 Predicted to enable fibroblast growth factor receptor binding activity and growth factor activity. Acts upstream of or within nervous system development and pectoral fin morphogenesis. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Is expressed in several structures, including forebrain; otic vesicle; pectoral fin bud; tail bud; and ventral fin fold. Human ortholog(s) of this gene implicated in syndactyly type 8. Orthologous to human FGF16 (fibroblast growth factor 16).

NR:

description
PREDICTED: fibroblast growth factor 16

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0008283 cell population proliferation biological_process
GO:0035138 pectoral fin morphogenesis biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228421.3 True 1652 mRNA 0.59 3 19258598 19268334

Neighbor

gene id symbol gene type direction distance location
nlgn3 nlgn3,nlgn3a,LOC107689138,LOC107663109 coding downstream 621599 18424758 ~ 18636999 (-)
LOC103026001 NA coding downstream 873546 18379794 ~ 18385052 (-)
LOC103044618 plp1,LOC107689137,LOC107554657,LOC103135636,LOC103135639,LOC108242072 coding downstream 888574 18356989 ~ 18370024 (-)
fut11 fut11,LOC107689135,LOC107710942,LOC107733430,LOC107663104 coding downstream 915595 18337692 ~ 18343003 (-)
LOC103028142 cetn2,LOC108436166,LOC102228171 coding downstream 975699 18280633 ~ 18282899 (-)
LOC103038011 uprt,LOC108440089,LOC108443770 coding upstream 82567 19350901 ~ 19359251 (-)
LOC103041563 LOC108440096,LOC103359160 coding upstream 308163 19576497 ~ 19584235 (-)
LOC103021299 NA coding upstream 325970 19594304 ~ 19600998 (-)
LOC103041262 LOC108440093 coding upstream 337691 19606025 ~ 19623243 (-)
znf711 znf711,LOC107684921,LOC107746145,LOC107569605,LOC107674883 coding upstream 637409 19905743 ~ 19913308 (-)
G206613 NA non-coding downstream 1567 19256544 ~ 19257031 (-)
G206597 NA non-coding downstream 87959 19160405 ~ 19170639 (-)
G206593 NA non-coding downstream 119141 19063499 ~ 19139457 (-)
G206595 magt1,LOC107566011,LOC106604089,LOC106592046,LOC107689142 non-coding downstream 120951 19134598 ~ 19137647 (-)
G206583 NA non-coding downstream 170927 18923815 ~ 19087671 (-)
G206629 abcb7 non-coding upstream 135876 19404210 ~ 19407338 (-)
G206640 NA non-coding upstream 227098 19495432 ~ 19511159 (-)
G206634 NA non-coding upstream 245783 19514117 ~ 19516119 (-)
G206653 NA non-coding upstream 297878 19566212 ~ 19566544 (-)
G206685 NA non-coding upstream 333265 19601599 ~ 19681210 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other downstream 130872 19037694 ~ 19127726 (-)
G206575 NA other downstream 419682 18838369 ~ 18838916 (-)
LOC111195732 NA other downstream 1216659 18039675 ~ 18041939 (-)
LOC103033759 NA other downstream 1406407 17843966 ~ 17852191 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 1957605 17259786 ~ 17300993 (-)
LOC103046671 NA other upstream 656697 19925031 ~ 19994802 (-)
LOC103046056 NA other upstream 689143 19957477 ~ 19968031 (-)
LOC103040644 LOC108443111 other upstream 838763 20107097 ~ 20274905 (-)
LOC103040850 hmgn5 other upstream 1195369 20463703 ~ 20512287 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other upstream 1409119 20677453 ~ 20782984 (-)

Expression


Co-expression Network